LOCUS       NM_001271243            2256 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus trophinin associated protein (Troap), mRNA.
ACCESSION   NM_001271243 XM_238523
VERSION     NM_001271243.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Sep 8, 2012 this sequence version replaced XM_238523.6.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.216999.1,
                                           SRR26360181.2425575.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                JAXUCZ010000007.1  132113488-132113586
            100-248             JAXUCZ010000007.1  132113832-132113980
            249-435             JAXUCZ010000007.1  132114088-132114274
            436-596             JAXUCZ010000007.1  132115420-132115580
            597-734             JAXUCZ010000007.1  132115665-132115802
            735-817             JAXUCZ010000007.1  132115980-132116062
            818-894             JAXUCZ010000007.1  132116399-132116475
            895-1010            JAXUCZ010000007.1  132116915-132117030
            1011-1094           JAXUCZ010000007.1  132118949-132119032
            1095-1154           JAXUCZ010000007.1  132119187-132119246
            1155-1289           JAXUCZ010000007.1  132119714-132119848
            1290-1878           JAXUCZ010000007.1  132119992-132120580
            1879-2072           JAXUCZ010000007.1  132120785-132120978
            2073-2256           JAXUCZ010000007.1  132121113-132121296
FEATURES             Location/Qualifiers
     source          1..2256
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..2256
                     /gene="Troap"
                     /note="trophinin associated protein"
                     /db_xref="GeneID:300219"
                     /db_xref="RGD:1306870"
     exon            1..99
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            100..248
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     CDS             105..2120
                     /gene="Troap"
                     /codon_start=1
                     /product="tastin"
                     /protein_id="NP_001258172.1"
                     /db_xref="GeneID:300219"
                     /db_xref="RGD:1306870"
                     /translation="MTTLQTSKDPHLRGVSPNPSKIPVLSQRCSDFSSAKSGSLDQEN
                     QDPRRSAKKPLHRTQRPLTDTAGLRSKALHQTEKSQRLRITQPRNPLEELKPSSGGSN
                     VGLTHPQTEASGAIEFVADPAALATILSGEGVKSCPLESRSSLAQRVLVRERKGGTHI
                     QRGQSARSSAYLAPRIRAHQADPARASCFSRLEGPGLRDRTFSSQRSEALNPRAGSSF
                     HSSARPSLQELRRETCGGSRDGSCTDSRTSASQASRLLLKTPVQPASLTLRGDHEAVP
                     HSGGEGGPKLGLAQRVPLKESLTHTRTTYSSMKRFTTRRKTQFTPLRSLPRVQQAQWL
                     SGLSPHSSPEEPALPWEQIAVKLFDQESLIALQKGPGKPSVASTSGPQSTRTPSHQEL
                     KMQRIHILQQLLRQEVEGLATGNCAALNGGSALDTTERQPPVAEDSSTLSAPAHKSET
                     PLALPEHSGVTEALPAEEREEPQACPGEDTKESQPCSTTELKPPVPHRAEPEPPAPCL
                     PALAGPPLPSCRGQAEPPEARPGIQLGASAASALQAGNPESSPEPCCSQGPPAATSLT
                     STQSPVCASFPIHSLHSSRSPTGRSGPSSVAPRTLALRQRLRACLTTIHCFHEARLDD
                     ECAFYTSRALPPGPTRVCTNPVATMLEWQDALRFIPVGPVAPQDSPS"
     exon            249..435
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            436..596
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            597..734
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            735..817
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            818..894
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            895..1010
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            1011..1094
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1154
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            1155..1289
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            1290..1878
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2072
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
     exon            2073..2256
                     /gene="Troap"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagcagcag cagcagcagc agcagcagca gtagaaatcc agaaaatcgg cgaaaaaaac
       61 ctgagaaagt agaggtgacc ccgaggagct cctggaatgc cgccatgact accctccaaa
      121 ccagtaagga cccgcacctc cgaggtgtat ctcccaaccc tagcaaaatt ccagtactct
      181 ctcaaagatg ctcggatttt tcctcagcca agtcgggctc tctggaccag gagaaccaag
      241 atccaaggag atcagcgaag aaaccactgc accgtactca acgtcccctc actgacacgg
      301 caggcctcag atcgaaagcc ctgcaccaga cagaaaaatc acaaagactg aggatcactc
      361 agccgcggaa ccctttggag gaactcaagc ctagctctgg gggatcaaat gtggggctca
      421 cccatcccca gacagaggcc tcaggggcta tagagtttgt tgctgaccct gcagccctgg
      481 ccaccatcct gtcaggtgag ggagtgaaga gctgtcccct ggagtcccgg tccagtctgg
      541 ctcagagagt gctagtgcgt gagagaaagg gaggcaccca catccagagg ggccagagtg
      601 cacggtcttc cgcatacctg gctcccagaa tccgcgccca ccaagcggat cccgccaggg
      661 cttcctgctt ctcaaggctg gagggcccag ggctccgaga ccgcactttt tcctcacaga
      721 ggtcagaggc tctgaaccca cgtgcaggtt cctcctttca ttcctccgct cgccccagtt
      781 tacaggagct cagaagagag acctgtggcg gtagcaggga tggatcctgt actgacagca
      841 ggacctcagc aagccaggcc tcgagactgc tcctgaagac cccggtgcag cctgcttcct
      901 taaccctcag aggagaccac gaggctgttc ctcactcagg tggagaagga ggacccaaac
      961 tgggtctggc tcaacgagtt ccattaaaag aaagcctaac acacaccagg accacatatt
     1021 catccatgaa acgctttacc actcgacgga aaacccaatt cacacccctc cggtcactac
     1081 ctagagtcca gcaggcccaa tggctgagtg gcctctctcc tcattcctcc cctgaagagc
     1141 ctgccctgcc ctgggagcag attgctgtga agttgtttga ccaggagagt ctcatcgctt
     1201 tgcagaaggg acctgggaaa ccatctgtgg caagcacttc tggacctcag tccacgagaa
     1261 cccccagcca ccaggagcta aagatgcagc gcatccatat tttgcagcag ctcttgcggc
     1321 aggaagtaga ggggctggca acgggcaatt gtgcagctct gaatggaggc tccgctttag
     1381 atacgaccga acgtcagccc ccagtggctg aagactctag cactctgagt gctccagcac
     1441 acaagtctga aactcccctt gcactgccag aacactctgg tgtgacagag gccctccctg
     1501 cggaagagcg tgaggagcca caggcttgcc ctggggaaga cactaaggag tcacagccct
     1561 gctctaccac agaactaaag cccccagtgc cacatagagc tgagccagag ccgccagcac
     1621 cttgccttcc agcactggca ggaccccctc tgcctagttg tcggggacag gctgagcccc
     1681 ctgaggctcg ccctgggata cagctgggag catcggcagc cagcgctctg caagctggaa
     1741 acccagagtc tagcccagag ccctgttgca gtcaggggcc tccagcagcc accagcctga
     1801 cctcgacaca aagcccagtg tgtgccagct tccctatcca ctcactgcac tcttcgagat
     1861 ccccgacagg ccgctcaggc cccagcagtg tggcccctcg aaccctggcc ctgaggcagc
     1921 gcctcagagc ttgtctcacc accatccact gtttccacga ggctcgcctg gatgacgaat
     1981 gtgccttcta caccagtcga gccctgcccc cagggcctac cagggtctgc accaatcctg
     2041 ttgctacaat gcttgaatgg caagatgccc tgcgtttcat tccagttggc cctgtggccc
     2101 cacaggactc tccgtcgtga ctctggcctt ttctgggctt ctgccctgct gtactcaccc
     2161 cttcctttag ccttatttat tgtcgacctg cccattggac tgggagccaa cgccctttta
     2221 tcctttataa taaagtttct ataaattgtg tttgaa
//
