LOCUS       XM_039100389            5792 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trophinin (Tro), transcript variant
            X2, mRNA.
ACCESSION   XM_039100389
VERSION     XM_039100389.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5792
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5792
                     /gene="Tro"
                     /note="trophinin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 44 ESTs, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 67 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100912141"
                     /db_xref="RGD:6488256"
     CDS             178..5565
                     /gene="Tro"
                     /codon_start=1
                     /product="trophinin isoform X1"
                     /protein_id="XP_038956317.1"
                     /db_xref="GeneID:100912141"
                     /db_xref="RGD:6488256"
                     /translation="MDRRNDYGYRVPTFQGPLPPPGSLGLPFSPDAQTENTEKDNALL
                     MHTLLSATKDPPIASRPKKNKTKKTSIKPIAKTTPTSPPVPPANDNASNKPKVTLQAL
                     NLPMFTQISQASAATEAPSIQASVTAQTKKAKTKRVPPKVSLTASEDVTPQLKSPLQG
                     LNLPVTASTSQSPIANESANSLALAVSKPKKSSKAKKAANKTVPSATEISLASTATHT
                     ATTQGQAAKETGSVQATAATVRSKKTSKGKRTTAKTANTDTEYVEASNAIEASSRQIE
                     TSAVVLRPKKPKGKKVTNKGSNSAAELSEAPPAIQMVTNHALSVTVRIKRGSRARKAA
                     TKTRATEGQAHIADQGGQASQASISALETQVAAAVQALADDYLAHLSLEPTTRTRSKR
                     NRKSKHPNGEERTGNNYRRIPWSRRPPPPRDVAILQEKANKLVKYLLVKDQTKIPIKR
                     SDMLKDVIQEYDEYFPEILERASYALEKVKEGAALGDGRTGEALNRRKMFRVNLKEID
                     KQSSLYILISTQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLRKLG
                     LRPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVL
                     KFACKVQKKDPKDWAAQYREAVEMDVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWN
                     WDDMDIDCLTREELGDDAQAWSRFSFEIESRAQENADPATNVNFNQGASTRNSFNDGA
                     SISFGGITNPSGGFGGISNPNGGFGGRNGITFGSVPNTSANFSSAASISFGGAPSTST
                     SFNGGTSISFSGTPSTSATFCNTASISFGGAPSTSTSFSSTASISFGGAPSTSTSFSS
                     TASISFGGAPSTSTSFSSTASISFGGAPSIGSSFSGGSSISFGGAPTTSTSFSGGASI
                     SFGGAPCTSASFNGGASCGFGGTLGSTVAGFSGALSTSTSFGSAPTTSTVFSGALSTT
                     TGFGGTLSTSVCFGSSPYSGTGFGGTLSTSISFGGSPSTNTGFGGTLSTSVSFGASSS
                     TSSDFGGTLSTSVSFGGSSGASGTGFGGTLNSSTSFGGGISTSTVFGSAVNSSASFGG
                     AISTGFSGALNSSASFGSAISTSSGFGSALSTSASFGGVLNGSAGFGGAISTSASFGG
                     VLNGSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTSASF
                     GGALNNSAGFGGAISTSASFGGALNNSAGFGGTMSTSASFGGALNNNAGFGGAISTSA
                     SFGGALNNNAGFGGAISTSASFGGTLNNNAGFGGAISTSASFGGALNNSAGFGGAIST
                     SASFGGALNNSAGFGGAISTSASFGGALNNSAGFGGAISTSASFGGALSNSPDFGGAF
                     STSVGFGGTLSTTDFGSTHSNSISFGSAPSTSVSFGGSHSTNLCFGGAPSTSLCFGSA
                     SNTNLCFGGSSSTNSCFSGATSANYSEGHSTSAIFSFGNGLSTSAGFGNGLGTSAGFG
                     SSLGTSTGFGGSLGPNASFSGGLGTSPGFSGGLGTSTDFGGGLSHSADFNGGLGTSAG
                     FNGGLNTNTDFGGELGTGAGFGDGLGSSTGFGGGLVTSDGFAGDLGTNTGFSGTLGTG
                     AGFSVSLSTGNGFGSGPNASFDRGLNTIIGFGGDSNTSSGFTGEPNTGSSFSNGPSSI
                     VGFSGGPSTGAGFCSGPSTGGFSGGPSTGPGFGGPSTAGGFGGPSTVAGFGSGLNTNA
                     GFGGGPNTSTGFGGGLSTSAAFGGGPPSTSTGFGGGLSTNAGFGGGPPSTGTGFGGGA
                     NGLGSCGFSYG"
ORIGIN      
        1 tacaagctca gacctgagga gaggcttgga gagagcagac gtcctctcgg ctcacgagga
       61 cgaggtgagc tgaggtagcc agctttgagg aagaccccgt gaggggcttc aaagccgcgg
      121 cttcggggtg accagcttca cgcaacatta aggctcagct attagccttt cagaaagatg
      181 gatagaagaa atgactatgg ttatcgggtg cccacattcc agggccctct gcctccccct
      241 gggagcctag ggcttccttt ctctccagat gcacagacag agaacacaga aaaggacaac
      301 gccctgctga tgcataccct gttgtcagca actaaggacc caccgattgc cagccgacct
      361 aagaaaaaca agaccaagaa gacttctatt aagcctattg ctaagaccac acccacctcc
      421 cctccagtcc cacctgccaa tgataatgct agcaacaaac ctaaagtaac tttgcaggct
      481 ttaaacctac caatgttcac ccagattagc caggcttcag ctgctactga agcacctagt
      541 atccaggctt cagttactgc tcagaccaag aaagccaaga caaagagagt tccccccaag
      601 gtatccctaa ctgccagtga ggatgtcact ccacagctca agtcaccgtt acagggccta
      661 aacctgccag ttactgcatc gactagccag tctccaattg ccaatgagtc agctaattcc
      721 ctggccttag ctgtcagcaa acccaagaaa tcttctaagg caaagaaggc tgccaataag
      781 actgtgccta gtgccactga gatctcactg gcttcgactg ccacccacac agccactacc
      841 caaggccaag ctgccaagga gacaggtagt gtccaggcta cagcagccac tgtccgaagt
      901 aagaaaactt ccaaaggaaa aagaacaact gctaagactg caaatactga cactgaatat
      961 gtagaggcct caaatgccat tgaggcatct agcagacaga ttgagacctc agctgtagtt
     1021 ctaaggccca aaaaacccaa ggggaagaag gttaccaata aaggctcaaa ttctgctgct
     1081 gagctctctg aggctccacc tgccattcaa atggtcacaa accatgccct atcagtcact
     1141 gtacggatca agagagggtc tagggctcga aaggctgcca ctaagactcg ggcaactgaa
     1201 ggccaggctc atatcgctga ccaaggaggt caggcctctc aggccagcat aagtgccctg
     1261 gagactcagg ttgctgctgc tgtccaggcc ttggcagatg actatctggc tcatttgagt
     1321 ttagagccca ccaccagaac ccggagcaag aggaaccgga agtctaaaca tcccaatgga
     1381 gaagaaagaa ctgggaataa ttacaggaga atcccatgga gccggaggcc tccgccaccc
     1441 cgagatgtgg ccattttgca ggaaaaggca aacaagttgg tgaaatacct gttggttaaa
     1501 gaccagacaa agattccaat caaacgctca gacatgctga aggacgtcat ccaagaatat
     1561 gatgagtatt tcccagaaat ccttgaacga gcaagttatg ctctggagaa ggtgaaggaa
     1621 ggggcagccc tgggggatgg gcgcaccggg gaagctttaa acagaagaaa gatgtttcga
     1681 gtcaatctga aggaaattga taagcaaagt agcttgtata ttcttatcag cactcaggag
     1741 tcctctgcag gcatcctggg aacgaccaag gacacaccta agttgggtct cctcatggtg
     1801 attctgagtg tcattttcat gaatggcaac aaggccagtg aggctgtcat ctgggaggtg
     1861 ctgcgcaagt tggggctgcg ccctggggta agacattcac tctttggaga agtgagaaaa
     1921 ctcatcacag atgaatttgt gaagcagaaa tatctggaat acaagagggt ccccaacagc
     1981 agaccacctg agtatgaatt cttctggggc ctacgctctt accatgagac tagcaagatg
     2041 aaagtcctga aatttgcatg caaggtacag aagaaagatc ccaaagactg ggctgctcag
     2101 taccgcgagg cagttgagat ggacgttcag gctgcagctg tggctgtggc tgaggctgag
     2161 gccagggctg aggcaagagc ccaaatgggg attggagagg aagctgtggc tgggccctgg
     2221 aattgggatg acatggatat tgactgccta acaagggaag agttgggtga tgatgcacag
     2281 gcctggagca gattttcctt tgaaattgaa tccagagccc aagaaaatgc agatcccgcc
     2341 actaatgtca acttcaacca gggagctagt accagaaata gcttcaatga tggtgctagt
     2401 attagctttg gtggtataac taatcccagt ggtggctttg gtggcatatc caaccccaat
     2461 ggtggctttg ggggcagaaa tggcattact tttgggagtg tacccaacac ctctgccaac
     2521 ttcagcagtg cagcgagcat tagctttggt ggtgcgccca gcactagcac cagtttcaat
     2581 ggcggaacca gcattagctt cagtggcaca cccagtacta gtgccacttt ctgtaacaca
     2641 gcgagcatta gctttggcgg tgcaccgagc actagcacca gctttagcag cacagccagc
     2701 attagctttg gcggtgcacc gagcaccagt accagcttca gcagcacagc tagcattagc
     2761 tttggtggtg caccaagcac cagcaccagc ttcagcagca cagccagcat tagctttggt
     2821 ggggcaccca gcattggtag tagtttcagt ggtggatcca gcattagctt tggcggcgct
     2881 cctaccacca gtaccagttt cagtggtgga gccagtatta gctttggcgg tgcaccttgt
     2941 accagtgcca gtttcaatgg tggagccagc tgtggctttg gaggcacact cggcagtact
     3001 gtagctggct ttagtggtgc actcagcaca agcaccagct tcggcagtgc accaactaca
     3061 agcactgtct tcagtggtgc acttagcacc accactggct ttggaggcac acttagcacc
     3121 agcgtctgct ttggtagttc tccctactct ggcactggct ttggaggcac gctcagtacc
     3181 agtatctcct ttggtggttc tcctagcacc aatactggtt ttggtggtac actcagcacc
     3241 agtgtgtcct ttggtgcctc ttctagcacc agctctgact ttggtggcac actaagcact
     3301 agtgtaagct ttggtggctc ttctggtgcc agtggtactg gctttggtgg tacactcaac
     3361 agcagtacca gctttggcgg tggcatcagc accagcactg tctttggcag tgcagtcaac
     3421 agcagtgcca gctttggtgg tgccataagt actggcttta gtggtgcact caacagcagt
     3481 gccagctttg gtagtgccat cagcaccagt tctggctttg gcagtgcact aagcaccagt
     3541 gccagctttg gtggtgtact caatggcagt gctggctttg gcggtgccat cagcaccagt
     3601 gccagctttg gtggtgtact caatggcagt gctggttttg gcggtgccat cagcaccagt
     3661 gccagctttg gtggcgcact gaataacagt gctggctttg gcggtgccat cagcaccagt
     3721 gccagcttcg gtggcgcact gaataacagt gctggctttg gcggtgccat cagcaccagt
     3781 gccagctttg gtggcgcact gaataacagt gctggctttg gtggtgccat cagcaccagt
     3841 gccagctttg gtggcgcact gaataacagt gctggctttg gcggcaccat gagcaccagt
     3901 gccagctttg gtggcgcact gaataacaat gctggctttg gcggtgccat cagcaccagt
     3961 gccagctttg gtggcgcact gaataacaat gctggctttg gcggtgccat cagtacaagt
     4021 gccagctttg gtggcacact gaataacaat gctggctttg gcggtgccat cagtacgagt
     4081 gccagctttg gtggtgcact gaataacagt gctggctttg gtggagcaat tagtaccagt
     4141 gccagctttg gtggtgcact gaataacagt gctggctttg gcggtgccat cagtacgagt
     4201 gccagctttg gtggtgcact gaataacagt gctggctttg gtggagcaat tagtaccagt
     4261 gccagctttg gtggtgcact cagcaatagc cctgactttg gtggtgcgtt cagtaccagt
     4321 gttggctttg gtggcacact tagtaccact gacttcggta gtacccacag caacagcatt
     4381 agctttggca gtgctcccag taccagtgtt agctttggtg gctctcatag cactaacctc
     4441 tgttttggtg gagcacccag caccagtctc tgttttggca gtgcatctaa caccaaccta
     4501 tgctttggag gctcttccag caccaactcc tgctttagtg gtgctaccag tgccaattac
     4561 agtgaggggc acagcaccag tgccattttc agttttggga atgggctaag taccagtgct
     4621 ggctttggaa atgggttggg caccagtgct ggctttggca gcagcctagg taccagcact
     4681 ggctttggtg gaagcttagg ccccaatgct agcttcagtg gtggcctggg caccagccct
     4741 ggctttagcg gtggactagg caccagcaca gatttcggtg gcggactaag tcatagtgct
     4801 gacttcaatg gaggactggg taccagtgct ggcttcaatg gtggactaaa cactaacact
     4861 gattttggtg gtgaactggg cactggcgct ggctttggtg atggactggg cagcagcacc
     4921 ggctttggtg gtggactggt cactagtgat ggctttgctg gtgacctggg taccaatact
     4981 ggtttcagtg gcacacttgg cactggtgca ggctttagtg taagccttag cactggcaat
     5041 ggctttggca gtgggcctaa tgccagcttc gacagaggac tgaataccat cattggcttt
     5101 ggcggtgatt ccaacaccag tagtggcttt actggtgaac ccaacaccgg ctccagcttt
     5161 agtaatggac ccagttctat tgttggcttt agtggtggac caagcactgg tgctggcttc
     5221 tgcagtggac caagcactgg tggcttcagt ggtggaccaa gtacaggacc tggctttggt
     5281 ggaccaagca ctgcaggtgg ctttggagga ccaagcactg tagctggctt tggtagtgga
     5341 ctgaacacca atgctggatt cggcggtgga ccaaacacca gcactggctt tggtggtgga
     5401 ctgagcacca gtgctgcatt cggcggtgga ccaccaagca ccagcactgg ctttggtggt
     5461 ggactgagca ccaatgctgg attcggcggt ggaccaccaa gcaccggtac tggctttggt
     5521 ggtggagcca atggcctggg ttcctgtggc ttctcttacg gctagtaaag tttcaggctt
     5581 gttccccgtt tacggataac gctaaccgca gcagtacttc ctacggagcc aatgtgcggc
     5641 tttggaattg ttgtccacac agcagcctaa gcactattac ccatcagctg agtgaaacac
     5701 tgaaaaatct gctgttcctg ctttgtgttg cttcctgtgt tgttgtccta ttttggtatc
     5761 agagttacat taaatttgcc aaaggaagct ga
//
