LOCUS       NM_001402229            1727 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus TMF1-regulated nuclear protein 1 (Trnp1), mRNA.
ACCESSION   NM_001402229 XM_008764186
VERSION     NM_001402229.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Stahl,R., Walcher,T., De Juan Romero,C., Pilz,G.A., Cappello,S.,
            Irmler,M., Sanz-Aquela,J.M., Beckers,J., Blum,R., Borrell,V. and
            Gotz,M.
  TITLE     Trnp1 regulates expansion and folding of the mammalian cerebral
            cortex by control of radial glial fate
  JOURNAL   Cell 153 (3), 535-549 (2013)
   PUBMED   23622239
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Volpe,M., Shpungin,S., Barbi,C., Abrham,G., Malovani,H., Wides,R.
            and Nir,U.
  TITLE     trnp: A conserved mammalian gene encoding a nuclear protein that
            accelerates cell-cycle progression
  JOURNAL   DNA Cell Biol 25 (6), 331-339 (2006)
   PUBMED   16792503
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Mar 8, 2022 this sequence version replaced XM_008764186.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1455588.1,
                                           SRR26360176.1710837.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840105, SAMN12840106
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            NMD candidate          :: translation inferred from conservation
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-922               JAXUCZ010000005.1  150996212-150997133 c
            923-959             JAXUCZ010000005.1  150992047-150992083 c
            960-1727            JAXUCZ010000005.1  150990314-150991081 c
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1727
                     /gene="Trnp1"
                     /note="TMF1-regulated nuclear protein 1"
                     /db_xref="GeneID:688990"
                     /db_xref="RGD:1582917"
     exon            1..922
                     /gene="Trnp1"
                     /inference="alignment:Splign:2.1.0"
     CDS             90..767
                     /gene="Trnp1"
                     /codon_start=1
                     /product="TMF-regulated nuclear protein 1"
                     /protein_id="NP_001389158.1"
                     /db_xref="GeneID:688990"
                     /db_xref="RGD:1582917"
                     /translation="MPGCRISACGPGAQEGTAEPGSPPPPPREPLPSLQPPSSSPTST
                     PTSTQSPQLPEAAETPVEGQELQRWRQGASGGSGGASPAGIGGAGAAAGAGGRALELA
                     EARRRLLEVEGRRRLVSELESRVLQLHRVFLAAELRLAHRAESLSRLSGGVAQAELYL
                     AAHGSRLKKGARRGRRGRPPALLASALGLGSCVPWGAGRLRRGQGPEPDSPFRRSPPR
                     GPASPQR"
     exon            923..959
                     /gene="Trnp1"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1727
                     /gene="Trnp1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgggctctg cggccgcctc tcactagtct cgtgcccagc atctctcctc cccacgcacc
       61 gacagccctg ggtcgccgcg gggcggggga tgccgggctg ccgcatcagc gcctgcggcc
      121 caggggccca ggaggggacc gcagaaccag ggtcgccccc gccgccaccc cgggagcccc
      181 tgccgtccct ccagccccct tcctcatcgc cgacctcgac tccgacctcc actcagtcac
      241 cgcagttacc cgaagcggcc gagacacccg tggaggggca ggagctgcag cgctggcgcc
      301 agggtgctag tggggggtct gggggcgcga gcccggcggg gatcgggggc gcaggcgcgg
      361 cggcaggggc agggggccgc gcgctggagc tggccgaagc ccggcggcga ctgctggaag
      421 tggagggccg ccggcgccta gtgtcggagc tggagagccg ggtgctgcag ctgcaccgag
      481 tctttttggc tgccgagctg cgcctggcgc atcgcgccga gagcctgagc cgcttgagtg
      541 gcggcgtggc ccaggccgag ctctacctgg cagcgcacgg gtcgcgtctc aagaagggtg
      601 cgcgccgcgg tcgccggggt cgtccccctg cgctgctggc gtccgccctc ggcctgggga
      661 gctgcgtgcc ctggggcgca gggcggctgc ggcgcggcca gggcccggag cccgactcgc
      721 ccttccgccg cagcccgccc cgcggccccg cctcccccca gcgctgacct cagtaccccg
      781 gacccctggc ctcccaagac aggcggtctc caggtgcggg aggacggacg cacggacgga
      841 tgcaggtgct ggctagatgg acggcgtcat ctacgcggag gagacagcgg gggtccatgg
      901 gggtcctgaa agtgacacta aggtgccctt ggaggacaga agtgttggag cccccagagc
      961 tcctcaggcc tccactctat gggtctggac tgacttctgc attccgcgcc ttctctggat
     1021 accccgcctc caggaagact tccaggactg actgtaccca atctcagcgc cctcctctca
     1081 ggagccctta cagtggcaag agactgggtc ctgggaactt gctacactcc gaattgcttt
     1141 ccatacactg tatttgactt tgcttataca gagacccgag atgctctcag attagctgag
     1201 actgcagcca acattgctag tgtgaccaag aggagaattt cctcttaaag atagactcgt
     1261 tcttaaacaa gccacagtgt agctgaagtc cgcatcatca caagtcacag tgtaaccgga
     1321 gtccccatca tcaagtcaca gtgtagctga ggtccccagg atcccttctc tgacctgcag
     1381 ctcgagaagg cctctttgag gcaaatcact gctgtaggac acccccattt ctccttaccc
     1441 actgtccttg ccctccccct gtgagtgagg acatgactgt agcttcttgc agacaatcgg
     1501 ctgctgcctc ctagggggac ccttttctca ggatgaggtg gtggcaacat caaacttcca
     1561 aagtcgagtt acacgcacaa aggacatcca cttctccgtg tatcctgata gagggaagga
     1621 ggcacattta ctcacacacc gcccggaaca taggcttctg taaagtggct gtttatctac
     1681 tcagttccca accatatacg cgcaggaaga ataaagctaa ataacga
//
