LOCUS       NM_001107779            2915 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus tRNA methyltransferase 6 non-catalytic subunit
            (Trmt6), mRNA.
ACCESSION   NM_001107779 XM_001081240 XM_230548
VERSION     NM_001107779.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2915)
  AUTHORS   Li X, Xiong X, Zhang M, Wang K, Chen Y, Zhou J, Mao Y, Lv J, Yi D,
            Chen XW, Wang C, Qian SB and Yi C.
  TITLE     Base-Resolution Mapping Reveals Distinct m1A Methylome in Nuclear-
            and Mitochondrial-Encoded Transcripts
  JOURNAL   Mol Cell 68 (5), 993-1005 (2017)
   PUBMED   29107537
REFERENCE   2  (bases 1 to 2915)
  AUTHORS   Safra M, Sas-Chen A, Nir R, Winkler R, Nachshon A, Bar-Yaacov D,
            Erlacher M, Rossmanith W, Stern-Ginossar N and Schwartz S.
  TITLE     The m1A landscape on cytosolic and mitochondrial mRNA at
            single-base resolution
  JOURNAL   Nature 551 (7679), 251-255 (2017)
   PUBMED   29072297
REFERENCE   3  (bases 1 to 2915)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473949.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001081240.1, XM_230548.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..2915
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /note="tRNA methyltransferase 6 non-catalytic subunit"
                     /db_xref="GeneID:311441"
                     /db_xref="RGD:1308877"
     exon            1..252
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     CDS             122..1609
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /note="tRNA (adenine-N(1)-)-methyltransferase
                     non-catalytic subunit TRM6; tRNA methyltransferase 6
                     homolog"
                     /codon_start=1
                     /product="tRNA (adenine(58)-N(1))-methyltransferase
                     non-catalytic subunit TRM6"
                     /protein_id="NP_001101249.1"
                     /db_xref="GeneID:311441"
                     /db_xref="RGD:1308877"
                     /translation="MELSAAEQPSPQPPHLGDHCIHDGDFVVLKREDVFKAVQVQRRK
                     KVTFEKQWFYLDNAIGHSYGSTFEVSSGGSLQLRKKLEEPTSETKEAGTDNRNIVDDG
                     KSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIIT
                     ILKPSTRILSIMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCSGLVLGAM
                     MERMGGFGSIIQLYPGDGPVRAATACFGFPKSFLSGLHEFPLNKVKSLLNGTFSAEML
                     SSEPKDSTPVKESNGELEKEIAEQADKDSIADGPESNAEQNPVDIVPGDPESKEPKEK
                     GSKRDYIQEKQRRQEEQRKRHMEAAALLGERNADGLIVASRFHPTPLLLSLLDFVAPS
                     RPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGY
                     LLSGFTVVSDSHRVDPSLKSCASALDSPKTEEPAAKKQKCMESAS"
     exon            253..380
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            381..490
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            491..582
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            583..666
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            667..791
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            792..1141
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1227
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            1228..1330
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            1331..1417
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
     exon            1418..2915
                     /gene="Trmt6"
                     /gene_synonym="RGD1308877"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaagcgga agcggcgtgc agcacgtgga ggcggttccc gaggagacgc aggtccctcc
       61 tggttgtgct gggctcctag cggctgtagc aagaacggag gttgaagact gcctggcgtc
      121 catggagttg tcagcagcgg agcagccgag cccacagccc ccgcatctcg gggaccactg
      181 catccatgac ggcgacttcg tggtactgaa acgagaagat gtgttcaaag cagtgcaagt
      241 ccagcggaga aaaaaagtaa cttttgaaaa acagtggttc tacctggata acgccattgg
      301 ccatagttac gggtcaacgt ttgaagtgag cagtggagga agccttcagc tcaggaagaa
      361 gctggaagag cccacatcag agaccaaaga agcaggcact gataatcgaa atatagttga
      421 tgatggaaag tcccagaaac ttactcaaga tgatataaag gctctgaaag acaagggcat
      481 taaaggagag gaaatagttc agcagctaat tgaaaatagt acaacatttc gagacaagac
      541 agaatttgct caagataaat atattaaaaa gaagaagaaa aaatatgaag ccatcattac
      601 tattttgaag ccatctaccc gtattctttc aattatgtat tatgcaagag aacctggaaa
      661 aattaaccac atgagatatg atacactagc ccagatgttg accttgggaa atatccgtgc
      721 tggcaataaa atgattgtca tggaaacgtg ttcaggcttg gtgctaggtg ccatgatgga
      781 acgaatggga ggctttggct ccattattca gctgtaccct ggagatggac ctgttcgggc
      841 agcaacagct tgttttggat ttcccaaatc tttcctcagt ggtcttcatg aatttcccct
      901 caacaaagta aaaagtctcc tcaatggaac attttctgct gaaatgctat cctcagagcc
      961 taaagacagc actccagtta aagaaagtaa tggtgagctt gagaaagaga ttgctgagca
     1021 agcggataag gacagcattg cagacggccc agagagcaac gcagaacaga atccagtgga
     1081 cattgttcct ggggacccag agagtaagga gcctaaagaa aaaggaagca aaagagatta
     1141 tattcaggaa aaacagagga gacaagaaga gcagaggaaa agacatatgg aggctgctgc
     1201 tctgctggga gaaagaaatg cagatggttt gattgtggcc agtcgtttcc accccacacc
     1261 cctgctgctg tctttgctgg actttgtagc cccatcaagg ccgtttgtgg tctattgtca
     1321 gtataaagag cctttgttgg aatgctacac aaaactgcgg gagagaggag gagtcattaa
     1381 cttgagactg tctgaaacct ggctcagaaa ttaccaggtt ctgccagatc ggagtcatcc
     1441 caaattgttg atgagtggag gtggagggta ccttctgtca ggcttcactg ttgtctcgga
     1501 cagccatcga gtagacccca gtctcaagtc ctgtgcgagt gctttagact cacccaagac
     1561 tgaggagcca gcagccaaga aacagaaatg catggaatct gcctcttaac tcttaggaga
     1621 tcaatgtttg ttccaaggcc ttctgctgct ggtaattaaa ctttaagtgt caccactaaa
     1681 attttttccc tgtcctaaga gtatgtgtgc acctgttcct gggaagacgt aagccttttg
     1741 tttgcctctg atgcaggagg attagtcagg gctgcaactc tgatgggcag taatggattg
     1801 atacagcagt tgtgtatcac agaagactca gtacttaaag tatctgcaaa taccttggaa
     1861 atgtcaacac cttgaaaatg tggatgtgta agtctttgtt tatattgtaa gcaaagatga
     1921 atactgtgga ctagctaaaa catggtgaac aacgaaaggg aatttcctct catccctttt
     1981 cttccacctg accagtatgg atgtgtgagc ctatgagatt tacagtacca aaaatgtcta
     2041 ccctgtgccc tgcaatggaa taagctttta tagacactag attttgttat tttaatagtt
     2101 gaggcctgag gaagatccag gtatttcttt tcctgcctct ccccttttcg gtgcacagaa
     2161 aggtttggtg gatgctcctt tgctgtgaaa gcttctcctt tgttctggag gaagtgatta
     2221 aaatgtctgt gctctattaa acaattgatt gtccctctcc agacacagac acagaaacgt
     2281 gtgtcagtat tggtatatat acatatacac agatgtatct atgtgtcagc atggctggaa
     2341 tgtgctgtct gtggtggaca gggagaatgc atacaccttt attcgagctg tggtaaagac
     2401 ttgtgcagga cagagcagat atcggtgtgt tgctgtcatt ccttgtcaag tgtgtttcaa
     2461 gtgccttctg gggtttctcg ccctggtctg taaacatctg ctggtgtgag gtgggtgtct
     2521 ggggatgagg tgggtgtctg gggatgaggt gggtgtccgg ggatttcacg ccctgctctg
     2581 taaaggtctg ctggcataag gtaggtgtcc tttatctcct ctgagggaag tatggtcgga
     2641 tgcctttacc atctccattg taagaaatag gaaatgtgta gagttatgaa gacttgtctc
     2701 cttgagagtc tcaagtcttg ttcactagga catgcacagt gtttctgtca ccatagaatc
     2761 ctggccagcg tgaagcatct tgaaaggaaa aaaaattgct ctcctaatag cttgtgctgt
     2821 ttggataagg ctgcagtaaa aactttggtt tttaattcct ttttctctaa acaattgctt
     2881 ttaaagaata aaattttcct cctctgagcc ataag
//
