LOCUS       XM_039091970            6714 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tRNA methyltransferase 44 (Trmt44),
            transcript variant X8, mRNA.
ACCESSION   XM_039091970
VERSION     XM_039091970.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091970.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6714
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6714
                     /gene="Trmt44"
                     /gene_synonym="Mettl19; RGD1308380"
                     /note="tRNA methyltransferase 44; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 15
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 104 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:305443"
                     /db_xref="RGD:1308380"
     CDS             135..1568
                     /gene="Trmt44"
                     /gene_synonym="Mettl19; RGD1308380"
                     /codon_start=1
                     /product="probable tRNA (uracil-O(2)-)-methyltransferase
                     isoform X6"
                     /protein_id="XP_038947898.1"
                     /db_xref="GeneID:305443"
                     /db_xref="RGD:1308380"
                     /translation="MVHICFNFLSREVAFGWCCLPQAYLACRRTAVQAGQVWPEVTDP
                     EKFVYEDVAIATYLLILWEEERAEKGITTKQSFVDLGCGNGLLVHILSNEGHPGRGID
                     VRRRKIWDMYGPQTQLEEGSITPSDKTLFPGVDWLIGNHSDELTPWIPVIAARSSYTC
                     RFFVLPCCFFDFVGRYRRRQSKKTQYREYLDFVLEVGLSCGFHVQEDCLRIPSTKRVC
                     LIGKSRTYLPSAEVWMDEQRTRYLHSRQGLPQSLPGGGHAPSVPQIAAHDDDAGHQDS
                     HRTFDAGAECMPEGLAAERGTGAPATGLWVPGFCPREKAERVRNCAALPRDFIDQVVL
                     QVANLLLDGKRFNTGNSEAGSLKTWNGGGSLSLAEVAAELNSETLQQLKRECGGLQTL
                     LRNSHQVFEVLNGRVHIRDWRRELQREKPPEGKRSLSAEVFKTRICWFFTHHPDGCVL
                     PAACCPFAHGLEELRPSQTLKKQRQAP"
ORIGIN      
        1 aagaaagaac tggtggtgca agatgtttcc agtgggagtg tcaccttttt gcccttggaa
       61 gaagataatg aggagaattt ggaggttaaa atgagcaatg tgtatcagct ccgtctccat
      121 cacagcgaag gagaatggtt catatctgtt ttaattttct gtccagagag gtggcattcg
      181 gatggtgttg tctaccccaa gcctacctgg cttgcagaag aactgctgtc caagctggcc
      241 aggtttggcc tgaagtaacc gatcctgaaa agtttgtata tgaagatgtg gccatcgcta
      301 catacctgtt gatcctatgg gaagaggaga gggctgagaa gggcatcacc accaagcagt
      361 ctttcgtgga cctggggtgt ggaaatggcc ttctggtcca catcctgagc aacgaggggc
      421 atccaggcag agggattgat gtccgaagaa gaaaaatctg ggacatgtat ggaccccaaa
      481 ctcagctgga ggaaggttcc atcactccaa gtgacaagac actgttccct ggtgttgact
      541 ggctgattgg taaccattct gatgagctca ccccgtggat ccctgtcatt gcagccaggt
      601 cttcctacac ctgtcggttc ttcgtcctgc cctgctgttt ttttgacttt gtagggcgat
      661 accggcggcg gcaaagcaag aagacacagt accgagagta cctggacttc gtgctggagg
      721 tggggctctc ctgtggcttc cacgtacagg aggactgcct caggattccg tctaccaagc
      781 gggtctgcct cattgggaaa tccagaacat acctgccttc tgcagaggtc tggatggatg
      841 agcagagaac acgatacctg cacagcagac agggccttcc acagagcctg cctggtgggg
      901 gacatgcacc ttctgtaccc cagattgctg ctcacgatga cgatgctggt caccaggaca
      961 gtcacaggac ctttgatgct ggggctgagt gcatgccaga gggcctggct gctgagcgag
     1021 gaacaggagc cccagccaca ggactctggg tgcctgggtt ctgccctaga gaaaaggctg
     1081 agcgtgtgag gaattgtgct gctctccctc gagacttcat tgaccaagtg gttttacagg
     1141 tggcaaactt gttgttagat ggaaagaggt tcaacacggg aaactctgaa gccgggagtc
     1201 tgaagacctg gaatggagga gggagccttt ccttggcaga agtggctgca gaactaaact
     1261 cagaaacgct gcagcagctg aagcgggagt gtggaggcct acagaccctg ctcaggaata
     1321 gccatcaggt gtttgaagtt ctgaatgggc gagttcacat ccgtgactgg cggcgggagc
     1381 tgcagaggga aaagcctcca gaaggcaaga ggagcctgtc tgcagaggtg ttcaagactc
     1441 gaatctgctg gttcttcact caccaccctg atggttgtgt actgcctgct gcctgttgcc
     1501 cctttgcgca tgggctggaa gagctgcgcc cgtctcagac cttgaagaag cagaggcagg
     1561 ctccctgagt cacctcttca gtgttctcta gctgttgggt tctgtggctc tcctgcctgt
     1621 ctcccttatc ctgatgacat catgttggga ctgggttggc ttcagtctga cctgttggta
     1681 tgcagaacca ctgtcagtca ctggtacatg cgggctgtgg actgctctga tgccagagcc
     1741 accgtgtcag cctctgcaaa catgaccttc tcattcccgg gactgtgtac cccaggtctc
     1801 ctctgccgag gagctccctg ctcaagggat ccctgtaagc agaggcacag ggctttctga
     1861 ggtccttatt ggagtcctac agcttccaga gtcacccctg gccacctgtg ttcgaggcat
     1921 gactcagtga gcattgcctc caccttatcc ttctctttag aacattctcc ccagaggtgt
     1981 gggatggttt ttcctttcag gaaacatttc cgtttgtttt cagttttaaa caaaaaggac
     2041 cgctcactgc atctcagctg aatgtcctgg ggaccagtct ctgaaacccc ccatgtggta
     2101 gaagtatttg tggtgaccaa cctggtgtca tctgagtggt gagaataaag tcgtttattc
     2161 tgaagagcca agggctctag agcatcccgg agcagggcag ctaccatggg ctctcaggcc
     2221 cagctggtaa gaacccgcag agcttgctcc tgcctcttcc cttgacactt tcgtagcccc
     2281 agctcccaga gcagtgatgg ccgtctacca ctctctcgga tggactaggt tgtgtgtcct
     2341 caggaactca gagaggagca gtctctgtcc tctcattagc cctacctgta attgcctttt
     2401 ctcccaggtc cacaggggcc tagaagctat agagctcctt tccagcttgg cctcttgtct
     2461 gaaaggcagc gtttggtctc aggccctgta ggtgcttgga aatctaatga ttcccaagaa
     2521 tttaatgagg caaggttccc aggggtattg ggtctggctt tcaggttttt ctagagcccc
     2581 atgttaagat agctagactg agaggtggga caacagtctt aggttcccac cttttctagt
     2641 tcacaaagcc tcttgccaaa gcctggcttg gtctgggaga agataccaca gaagtgtctt
     2701 caggatgagc agtgggcttg cccccccttc attgactcac gccctttcca gggcctgcat
     2761 tcagtgagga caacttccag aagcccctgc atgaggatga gcaggcttag tgctcatgga
     2821 ggaggtaggc catacctagt cagtgtgctg cactgctgtt ctatttgtta aagcagcatt
     2881 ctaccatgtc agggacaggg acagaggagc aagtgagctc agctgaagga gtgtgctaac
     2941 ccaactgcca tgctggctgg tgaacaccca tcccaggcct ctgccctgca cacactcttg
     3001 ttcataatcg tggggtttgt ctggagcatg gcctcttggt ccctttggtt tctgagtctt
     3061 cagatgattg tggcccacaa gattagagct cagtgttggt ggtgagagct gctgtgagtt
     3121 caagagcact tacaaggtaa gggcatcacc tctgctttgg gtgatggttc gttttctttt
     3181 gatatgcatc aagtggcagt ggacctggag gcttagagca cttcggtagg acaagcataa
     3241 ttttgctggg tctttatgcc aggtctctcc tggctgctcc aaggtatagc ctacagctga
     3301 ggtctcagca gactagactg ggggaggagc tgtgcccatg gtctcgagct ggcaacagca
     3361 gcaggccacc tcctacctgt gtcacatcac acaagtggtg ctctgtcact tctcatttct
     3421 cctgatagga agcaggccat gggccctgcc cacactcaga acaggctggt ataacacaca
     3481 agcaccaata agtaaagatg gcggcccctt gttgccagcc acacttcata tccagacttg
     3541 cctcccaagc agcatgacca aatgtcagac acaagctctg gggacaatgc acattcacag
     3601 tctctacctt ttgactccac cttactccca agtgagtgaa tcatgaccct ccccctaagc
     3661 tcacactcta gaacttcagt cagcctggct tggaaacagc cttcactatt gtggggctgg
     3721 ctgtgtggga taggtacaca tcccagtgaa gtgatctgtc tctggggatg aatgcagaca
     3781 caggaagaag ccaccagacc agaggcagag tgagtgatgg ccacaagcca ggtatcctga
     3841 gagcccctta agaactggaa gagcagagag gttaccctag agccaaagcc agagtcccag
     3901 aagtcacttg gtttcagaca ctggctggct ttaagctggc ccagataggt ctcatggagc
     3961 agaacaccac ctgatgagac caagtaggag gccagaggtc attctagcat caaggactat
     4021 ggcctcagat acgtaatgaa aaggtcctgg atagccagca gtgcacttgg gtcttaggct
     4081 cagactcttt ggaccttaga ggaaagttcc agacttaatc ctgagccacc tggatggccc
     4141 aaaaaatggt atccccagtt acccttctac cagatgacaa gttgggagac acagatggca
     4201 agtcctgtgt caaggctaca cagtaatcta tatcaccaga gcagatgggc tgacatgctc
     4261 tgatgctcaa gtgaaccaga acctgcctga gactacaggt gcagggggtt gtaaagctct
     4321 tagagcatcc ccaacaccac tgcaggccct gggtacagag atggcttcag cagtgggggt
     4381 gaaacagatt tctcagaacc ttctggctgt tcccattagc tagtaccctg gctaagtcgg
     4441 ctaaaaccaa agtacaagcc agaaccatcg ccacaccagg cagaagggca cactgagcca
     4501 actggaattc tgggctctgc cagattccag ggtcctggcc agttccttct ccctcagcca
     4561 gggcagttct gccaaagtgc tgagtgcgca cttgtgccac gtgagcagag aaaccagggc
     4621 gggggagggc tgcaggcctg gctcctggcc tccaacagag aggctccaac ggacccacgt
     4681 ctgcagacct caagccagtt tttgagcgag tgaagccgtt ggagctccaa atggagaaac
     4741 tgctagcctg gttgggtagg gcctgtttac tggcccagca cactgaggct cccctgtaga
     4801 gggcagccaa gaagaactgc aacatttgct ggcctgggat ggagcttcca cagcatggcc
     4861 catatggcaa ccagtcaaga aatcagcctg tgacccagga accatagacc tgcaacacac
     4921 tagcttcttt cctggcttgc aggaccagca gtcattctgg tgatagtaca gagccagaga
     4981 caagctgcac ttttcatgag tgaggctgtc ttctacagta cattatgcct ttcttcctac
     5041 ctgagccctt aagactccct aaccatcaac taggctgcat cttcattgag cagagaacaa
     5101 aaaaggacgt ctgcttggct ttgcagaaat ccagggtcat gtggcagtga tttgttctgc
     5161 tatgggccac tccagagcaa acaaagaaaa gcccaagagg gaggggtgtg aggggtggag
     5221 tctccagaga gccacccaga gcctcctacg gagttatgag gccatttcct ccccctcctt
     5281 tctattccct ccctccctcc tccagctaca tgcagagttg aaagggttct agaatcaatc
     5341 caatcaccgt ccaaaggcta ggaactgggc tgggatcaag tctgtgccaa ctggtaactg
     5401 agttatggct tcataactca gcatagctag gaggaagtgt ggctcctcct agttgggtga
     5461 actgcaggct ggacaggaca tggagcagac ctgactggca gggacctcta agaatctgag
     5521 ctggggttgc caacttaggg tttccattcc caggggtggg gaagttgagg ctgtgccccg
     5581 gactgaagcc gatcttcagt agcagagaag ggagacagcc tggatgcctt tctggattgt
     5641 ctgagacctc acagtatttc ttcttgctgc ttcctatgag gtcttcagtc taactgctgg
     5701 atagttttct gtcaacacaa gctagggtta tttgtaacga gggaacctga gaaaatgcct
     5761 ccataagaac tggcagtaag gtgttttcct ggttggggga aagcctgagc ataagaaagc
     5821 aggctgagca agccagtaag cagcaccctc catggccttt gcgtcagctc ctgcttccag
     5881 atttctgccc tgcttgagtt cctggtctga cttgtgtgtg atagactatc acctgaaaat
     5941 gtaaactgaa ataaaccctt tcctccccag tttgccttgg ttatggtatt tcatcccagc
     6001 aatagaaacc gtaagacaag ttggtaccag gaaatagtat agtgttgttg tgaccatcct
     6061 gactggatgg tctcttgggc tagaagagac taggagggct ggggaggtgg ctcagaggtt
     6121 aagaagagac taggatcatt gaggcgaaat aatctggaaa agtgttcctt tagaatcaat
     6181 acgcagaatc tgtgatccag aggcagccac agtcacacct cacactagca gctgaacttg
     6241 gtagtgtgag agttacccag atgatatttt aaaggcgtcc gggagtcgtg cagagcagcg
     6301 gaggcttggc agtgtgtggc agaactggag tccctgaagg gagcccagga gagccagttg
     6361 gcagcagcat accccagcag tttggagatg ccagtgccat gggatgacta ccaagaacag
     6421 cagcggcagc aaagtggaac ccaccagatc ccaaaagaca agttgtttgt tgcacaggga
     6481 ggagccacag aagtgacctt tcaagtcctt gaggggcccg gattctgagt gactaccaga
     6541 cgctggcact gagttattta tactgctgga gtttattgct ggagttcggt tttgctttga
     6601 tttggttgtg atgtgtcctg gttcttccct cttgaaataa gaaagaattt ggtttttaaa
     6661 ggaactcaca gatgagagac tttaaatttt aaaggacttt ggattttaaa gaga
//
