LOCUS       XM_017602352            3076 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tRNA methyltransferase 2 homolog B
            (Trmt2b), mRNA.
ACCESSION   XM_017602352
VERSION     XM_017602352.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017602352.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017602352.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 4 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JACYVU010000445.1  2263295-2263421     c
            128-345             JACYVU010000445.1  2254678-2254895     c
            346-365             JACYVU010000445.1  2254656-2254675     c
            366-420             JACYVU010000445.1  2253605-2253659     c
            421-555             JACYVU010000445.1  2250966-2251100     c
            556-655             JACYVU010000445.1  2250015-2250114     c
            656-726             JACYVU010000445.1  2248961-2249031     c
            727-873             JACYVU010000445.1  2224739-2224885     c
            874-968             JACYVU010000445.1  2222407-2222501     c
            969-1186            JACYVU010000445.1  2221791-2222008     c
            1187-1276           JACYVU010000445.1  2221532-2221621     c
            1277-1396           JACYVU010000445.1  2220314-2220433     c
            1397-1496           JACYVU010000445.1  2219992-2220091     c
            1497-1572           JACYVU010000445.1  2206815-2206890     c
            1573-1573           "N"                1-1
            1574-3076           JACYVU010000445.1  2205312-2206814     c
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3076
                     /gene="Trmt2b"
                     /note="tRNA methyltransferase 2 homolog B; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 1 base in 1 codon; deleted 2 bases in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 83% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:503462"
                     /db_xref="RGD:1565132"
     CDS             148..1620
                     /gene="Trmt2b"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 2 bases in 1 codon; substituted 4 bases at 4
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:574..576,aa:OTHER)
                     /transl_except=(pos:724..726,aa:OTHER)
                     /transl_except=(pos:745..747,aa:OTHER)
                     /transl_except=(pos:1006..1008,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: tRNA
                     (uracil-5-)-methyltransferase homolog B"
                     /protein_id="XP_017457841.1"
                     /db_xref="GeneID:503462"
                     /db_xref="RGD:1565132"
                     /translation="MYNPRLFLSRVSFFSKPGLLPWDTARPPDLLQSFLGTAHKGCFT
                     SVIAKKHPIGQKYQKKQRHCRPDDSWQERLADAVTPFWRLRYEEQLKVKFEAQKKILQ
                     SLESYLQVLHGVSATVAVSQSEGLCCLLHPIMPSPTTTGYXNKSTFSVNQSPDGNPKT
                     VGYYLGTWRDGNAICVPCNHLKNIPDKHSQVAXYYEVFLXQSSVEPCLLFHEGGHWRE
                     LIVRTYKPGHTMAIVTFHPQGLSQEELCVQKVTLKDFSAKGPGAVCELTSLYFQESTM
                     TRCSHQQSPYXLLFGEPYIFEDLLGLKIQISPDAFFQINTAGAEILYQIIRELRRVNS
                     DSILLDTCCGTGTLWLDVASQVHGFELVEQAVEDARWSAAFNGVTNCEFHAGRAETIL
                     PQLLKSQKDEKLTVAVVNPARAGLYHRVVRAVRNCRAIHTLVFVSGKPPGESTRNFIE
                     LCCPPNSAKKLLSDAFILREAVCVDXFPHTPHCELVVLFT"
ORIGIN      
        1 aggcgggctg gagcgccgcg caccaggaag tgactggccc ctgcgacccc ttagcaccgt
       61 ccgctggttt tttagtttac cattgcacgg tccaaggcct tagtggctcc aaaggaagga
      121 gtcctgggca tcaagaaaag agtcctaatg tacaacccaa gattattcct ttccagggtg
      181 agtttcttct ccaaaccagg actgcttccc tgggatactg cgagaccacc agatttgtta
      241 cagtcctttt tgggcacagc acataagggg tgtttcacta gcgtgatagc taagaaacac
      301 ccaatcggac aaaaatatca gaagaaacaa aggcattgta gaccagatga ctcctggcag
      361 gagaggctgg ctgatgctgt gactccattc tggaggctga gatatgaaga acaactcaag
      421 gtgaaatttg aagctcagaa gaaaatttta caaagcctgg agtcttacct acaagtactc
      481 catggagtca gtgccacagt ggctgtatcc cagtctgagg ggctctgctg tctcctccat
      541 cccattatgc cctcccctac caccactggc tactagaaca agtccacctt ttctgtgaac
      601 cagagcccag atggcaatcc aaagaccgtg ggctattacc taggaacctg gagagatgga
      661 aatgccatct gtgtaccatg taatcatctg aaaaacatcc cagacaaaca cagtcaagtg
      721 gcttagtact atgaagtatt cctgtgacag tcttcagtgg aaccctgcct tttgtttcat
      781 gaaggtggtc actggcgtga actcatagtt cgaacctata agccaggaca cacaatggct
      841 attgtcactt ttcatcccca gggattaagt caagaggagc tctgtgttca gaaggtgacc
      901 ttgaaggatt tttctgctaa aggccctgga gcggtctgtg aattgacctc actttatttt
      961 caggaaagca ccatgacccg ttgcagccat cagcagtccc cctactagct cctgtttggg
     1021 gagccctaca tctttgaaga tcttctgggt ttgaagattc aaatctctcc agatgccttc
     1081 ttccagatca atactgctgg tgcagagatt ctgtatcaga tcatcaggga gctgaggaga
     1141 gtgaactctg atagcatcct cctagacact tgctgtggaa caggcactct ctggctcgat
     1201 gttgcctccc aagttcatgg ctttgagctg gtggagcagg cagtagagga tgccaggtgg
     1261 agtgcagcct ttaatggtgt caccaactgt gagtttcatg ctggcagagc agagacgatt
     1321 ttgccacagc tgttaaagtc acagaaagat gagaagttga ctgttgctgt ggtgaaccct
     1381 gcccgtgctg gcctgtatca cagagtggtg cgagccgttc ggaactgcag ggccatccac
     1441 actctagtgt ttgtttctgg caagccccct ggtgaaagca caaggaactt cattgaacta
     1501 tgctgtcctc caaactctgc taagaagctt ctaagtgacg ctttcatcct gagagaagct
     1561 gtttgtgtgg atntgtttcc ccacaccccg cactgtgagt tagtggtcct cttcacttga
     1621 taagaccgga aggctgcaag ctgataaggc tgaagttgtg ggagacactc aggttgccat
     1681 gggagaccgt gaaagcatca tcagagaaac caatctctga atcctggcaa aaagaatctg
     1741 gctgccctcc tctgaggcag attgaaatgt atgtagcttg tcctattcct ttggggctgt
     1801 ccacatttcc ctagctttga ctgctccttg aacctgaatt tgtgttgctc cgtcctttgg
     1861 ctgtctatcc atcattcaat atacagtctt gcctgccatg tgattctgct tttgttgtgg
     1921 ggataactgc tttgtgagca gctggcaata atttcacatt gaccaggatc tgtctcttta
     1981 ctctgagatt ttaccatttg cagttttgtt gttgttgttg ttttagtttg aaacagggtc
     2041 tcgcatagta cacactggcc ttgcactcac aatgtaactg aagttgattt cgaacttgtg
     2101 atccttctgc ctacactttg agtactggga ttacaggcat gtgccaccac acatggcttt
     2161 atgcagttat gggtatcaaa gccaaggaag gatgcatgta agggaatacc atttactaat
     2221 tgagctacag ccctagcccc ttgcaaatgt tttgcgaagt agaaacaaat tgagcttttg
     2281 acaaagcaga gtaagaggct agggagatgg ctaacagggt aaagtgctta ttgctcatac
     2341 acaggaagct gagtttggat ctccagcaca taacaacagg gcatagtggc atctgcctcg
     2401 tgcttgtgct gagaggtgta tacaggggga tcctgagggc tttcctggcc agtcagttta
     2461 gctaatacat tagccccagg ttcagtgaga taccctgtct caaataaaag gaattgaaga
     2521 atgatagaca cgtgatatca acatctgtcc tccacaagta taatcacaga tgtgtgtgtg
     2581 tgtgcacatg tgtgtacaca tatgacaccc atacaatgca gttatatagt gattacaggg
     2641 ttgttgggtt ttctcgactt tgacacatct agaatgtcct tggatggtga tttctgggat
     2701 cagagagatg gctcagcatt cacaagcata taatgctctc acagagcatt atatcaagtt
     2761 gttcataacc aagcatataa tgctctcaca gagcattata tcaagttgtt cataaccgcc
     2821 tataactcta gttccagggg atccgatact ttcttctgac atctatggac actgttctca
     2881 tgcacaaacc cacattcaca ggcatgtaaa tacacataat taaaaaaaaa cttaaagaga
     2941 aatgtggtta tctctaggag caataatgcc atttatctct ttttttttct ccatctttat
     3001 taaattgggt atttcttatt tacattacaa ttgttattcc ccttcccagt ttccaggcaa
     3061 acatccccct agcccc
//
