LOCUS       NM_001011895            2266 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus tRNA methyltransferase 2 homolog A (Trmt2a),
            mRNA.
ACCESSION   NM_001011895 XM_213568
VERSION     NM_001011895.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2266)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083619.1.
            
            On Feb 11, 2005 this sequence version replaced XM_213568.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083619.1, SRR8487230.113318.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2266
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q23"
     gene            1..2266
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /note="tRNA methyltransferase 2 homolog A"
                     /db_xref="GeneID:287953"
                     /db_xref="RGD:1310418"
     exon            1..265
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     CDS             242..2089
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /EC_number="2.1.1.35"
                     /note="HpaII tiny fragments locus 9c; TRM2 tRNA
                     methyltransferase 2 homolog A"
                     /codon_start=1
                     /product="tRNA (uracil-5-)-methyltransferase homolog A"
                     /protein_id="NP_001011895.1"
                     /db_xref="GeneID:287953"
                     /db_xref="RGD:1310418"
                     /translation="MSEKLDTEVPEHMEDCGQDVSAVGSSAASVCQDEKEDPGPAAGP
                     GTQPGLYSYIRDDLFTSEIFKLELQNVPRHASFSDVRRFLGRFGLQSHKIKLFGQPPC
                     AFVTFRSAAERDKALRVLHGVLWKGRPLSVRLARPKADPMARKRRQEGDNEPTATQIA
                     DVVTPLWTVPYTEQLEQKRLECERVLQKLAKEIGNTNHALLPWLLLQRQQHNKACCPL
                     EGVKPSPQQTEYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAPPFDTVHIPQAT
                     KQLVKAFQEFIRSTPYSAYDPETYTGHWKQLTVRTSRRGQAMAIAHFHPQKLSSEEVA
                     GLKASLVCHFMEGPGKASGVTSLYFVEEGQRKTPSQEGLPLEHMAGDQCIQEDLLGLT
                     FRISPHAFFQVNTPAAEVLYTVIQEWAQLDGGSTVLDVCCGTGTIGLALAPKVKKVIG
                     IELCQEAVEDARMNALTNELSNVEFHCGRAEDLVPGLVSKLSSQQLVAVLDPPRAGLH
                     SKVILAMRKAENIKRLLYVSCNPRAAMGNFVDLCRAPSNRVKGTPFHPVKAVAVDLFP
                     QTPHCEMLILFERMQQHPNGIGALEHQDLQTPRNLPDLTAQETETSLSP"
     exon            266..813
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            814..922
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1104
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1219
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1220..1335
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1447
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1448..1570
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1571..1646
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1763
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1764..1860
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..2241
                     /gene="Trmt2a"
                     /gene_synonym="Htf9c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgcggccggg gttcgctggc cgactaaagg caggcgaagc gtgtccccct caccggctct
       61 tggggagcgg gcggtgcatc tgtagagctc agtcccagct ctgagcaccc gagttttgag
      121 tccctgtgtg gagctgcggt ctaccttcac cgcagcgcac ctcgtatctg agcacttgtt
      181 tgagaggcct agctggtggt cctcgtgagc accctggtcc aggcaacaga cgagccaggc
      241 gatgagtgag aagctggaca cggaagttcc ggagcacatg gaggactgcg gccaggatgt
      301 cagtgcagtg ggcagctctg cagcctcagt atgtcaagat gagaaagagg accctgggcc
      361 agctgcaggg cctggaactc agcctgggct ctacagctac ataagggatg acttgttcac
      421 ctcagagatc tttaaactgg agctccaaaa tgtacctcgc cacgccagct tcagtgacgt
      481 ccggcgtttt ttaggccgtt ttggcttaca atcccacaaa atcaaactct ttggacagcc
      541 accatgtgcc tttgtgacat ttcgcagtgc tgctgaacga gacaaggcct tgcgagtgct
      601 gcatggtgtt ctctggaagg gtcgtccact cagtgtacga ctggcccgac ccaaggctga
      661 ccccatggct aggaagaggc ggcaagaagg cgataatgaa ccaacagcaa cacagattgc
      721 cgatgtggtg acccctcttt ggacagtgcc ctacactgag cagctggagc agaagcgact
      781 ggaatgtgag cgggtgctac agaaactggc caaggaaatt gggaacacta accatgccct
      841 gctaccctgg ctgctcttgc agagacaaca gcacaataaa gcttgttgcc cattggaggg
      901 ggtcaagcca tcaccccagc agactgagta ccgtaacaag tgtgaatttc tggtcggagt
      961 tggggtagat ggagaggaca acactgttgg ctgccggctt ggcaagtaca agggcgggac
     1021 gtgtgctgtg gcgcctccct ttgacactgt gcacattcca caggccacta agcagctggt
     1081 gaaggccttc caggagttca tccgttccac accatattcg gcatatgacc ctgagacata
     1141 cacaggccac tggaagcaac tgactgtccg caccagccgc cgaggtcaag ccatggccat
     1201 tgcccacttc catccccaga aactgagctc tgaggaggtg gcaggactaa aggcctccct
     1261 ggtgtgccac ttcatggagg ggccaggcaa ggccagtggg gtgacatccc tctactttgt
     1321 ggaggaggga cagagaaaga ctcccagcca ggaaggcctg cccctggagc atatggccgg
     1381 tgaccagtgc attcaggaag acctgctagg gctcactttc cgcatctccc ctcatgcatt
     1441 cttccaggta aacacacctg cagccgaggt gctctacaca gtcatccagg aatgggccca
     1501 gctggatggg ggcagcacag tgttggacgt ttgctgtggc actggtacca tagggctagc
     1561 cctggctccg aaggtgaaga aagtaattgg gattgaactg tgccaggagg ctgtggagga
     1621 tgcccgtatg aacgccctca ccaatgagct gagcaacgtt gagttccact gcggcagggc
     1681 tgaggatctg gtgccaggct tggtgagcaa actgtcttcc cagcaacttg tagctgttct
     1741 agacccacca cgggctggcc tacattctaa ggtgattctg gccatgagga aagctgagaa
     1801 catcaagcgg ctcctgtatg tttcctgcaa ccccagggca gccatgggca actttgtgga
     1861 tctctgcaga gccccatcta accgagtgaa aggtacccca ttccatccag tcaaggctgt
     1921 ggcagtggac ctgttcccac agaccccaca ctgtgaaatg cttatcctgt ttgagaggat
     1981 gcaacaacac cctaatggca taggggccct ggaacatcaa gaccttcaaa ccccaagaaa
     2041 tcttcccgac ctcactgcac aggaaacaga gacttccctc tcaccctagg ggaagtacag
     2101 gagcacagga aaactgggga gctccttagg gatgacaaag caatggtggg gctatctagc
     2161 tggtactaca aatgtgtgaa tacctgtgtc ctaataatgg gatagctaga ttctagaata
     2221 aacaattgct gattttactg aaaaaaaaaa aaaaaaaaaa aaaaaa
//
