LOCUS       NM_001037192            2642 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tRNA methyltransferase 1-like (Trmt1l), mRNA.
ACCESSION   NM_001037192 XM_222727
VERSION     NM_001037192.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2642)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   2  (bases 1 to 2642)
  AUTHORS   Vauti,F., Goller,T., Beine,R., Becker,L., Klopstock,T.,
            Holter,S.M., Wurst,W., Fuchs,H., Gailus-Durner,V., de Angelis,M.H.
            and Arnold,H.H.
  TITLE     The mouse Trm1-like gene is expressed in neural tissues and plays a
            role in motor coordination and exploratory behaviour
  JOURNAL   Gene 389 (2), 174-185 (2007)
   PUBMED   17198746
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC100650.1.
            
            On Nov 18, 2005 this sequence version replaced XM_222727.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC100650.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q21"
     gene            1..2642
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /note="tRNA methyltransferase 1-like"
                     /db_xref="GeneID:304851"
                     /db_xref="RGD:1307890"
     exon            1..440
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             221..2392
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /note="TRM1-like protein; TRM1 tRNA methyltransferase
                     1-like; tRNA methyltransferase 1 homolog-like"
                     /codon_start=1
                     /product="TRMT1-like protein"
                     /protein_id="NP_001032269.1"
                     /db_xref="GeneID:304851"
                     /db_xref="RGD:1307890"
                     /translation="MENMAEEELLPQEKEEAQVRVPTPDSAPVPAPAADTALDSAPTP
                     DSAPAPALAPAPAPALSPSLASVPEEAESKRHISIQRRLADLEKLAFGTEGDVDSASS
                     LNSDNLENIQTCPLCPKEKFRAYSSHKLRRHLQNLHWKISVEFEGSRMCICHLACRPV
                     KPTIVGEQISSKLGAHYHCIICSATITRRTDMLGHVKRHVNKGETKSRYISASTAKSS
                     NEVLKETDTDIQVFPNYSIPQKTDSYFNPKMKLNRQIIFCTLAALAEERKPLECLDAF
                     GATGIMGLQWAKHLGNAVKVTINDLNENSVTLIQKNCHLNKLKVVVDSEEKEEGDGLE
                     DCSTAGDIQVTRMDANVLMHLRSFDFIHLDPFGTSVNYLDSAFRNVRNLGIVSVTSTD
                     ISSLYAKAQHVARRHYGCNIVRTEYYKELAARIVVAAVARAAARCNKGVEVLFAVALE
                     HFVLVVVRVLRGPTSADETAKKIQYLIHCQWCEERIFQKDGNMVEENPYKQLPCNCHG
                     SMPGKTAIELGPLWSSSLFNTGFLKRMLFESIHHGLDDIQPLIKTLIFESECTPQSQC
                     SVHAPSNTNKQEENGVFVKTTDDTTIDIYSAQGKRKSNEMAINVAKKQKTDASTAHPP
                     FYYNIHRHSIKGMNMPKLKKFLCCLSQAGFRVSRTHFDPMGIRTDASLTQFKSILLKY
                     STPTYTGGQSEGQVPAPEDTVTDPVELSVNDKAEVSGCRRW"
     exon            441..545
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            546..659
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            660..724
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            725..854
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            855..978
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1058
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1302
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1303..1515
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1516..1706
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1785
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1786..1952
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            1953..2015
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2016..2142
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
     exon            2143..2618
                     /gene="Trmt1l"
                     /gene_synonym="RGD1307890; Trm1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggggaaggg gaagccggcg aaggctggaa tcgctgcctc tggctttcag tttttcggct
       61 cgcagggttg ggtcactgac gcttcgccgt ttgtctgtgg ctcgcgtaca gccttcccaa
      121 ttgcttcccc gcccttggat ccagccctgt gtgcattaac gtctattatc ccactccgcc
      181 gcgagtcccc tccgcgtccc ctggcacgga ggccgtaact atggagaata tggcggagga
      241 ggagctgcta ccccaggaga aggaggaggc ccaggtcagg gtcccgaccc cggattcggc
      301 tccggtccca gctccggccg cagatacggc tctggactcg gctccgacgc cggactcggc
      361 tccagcccca gcccttgccc cggccccggc tccggccctg tccccgtccc tagcctctgt
      421 ccccgaggag gctgaaagca agagacacat ctcaattcaa aggcggcttg ctgatctgga
      481 gaagttagct tttgggactg aaggagatgt tgactctgcc agttcattga actcagataa
      541 tctggaaaac attcaaactt gcccgctgtg tcctaaggaa aagttcagag cttacagcag
      601 tcataagctt cgtcgacacc ttcagaattt acattggaaa atctcagttg aatttgaagg
      661 ctccaggatg tgcatctgtc acttagcgtg ccggccagtg aagccaacaa ttgttggaga
      721 gcagatatcc agtaaattgg gagcccatta tcactgcatc atttgttcag ctacaatcac
      781 cagaaggact gacatgctag gacatgttaa acgccatgtg aacaaaggag aaactaaatc
      841 caggtacatt tctgcttcta ccgccaaatc atctaatgaa gttctgaagg agacagacac
      901 ggatatacaa gtttttccta actactctat tcctcagaaa acagactcat attttaatcc
      961 caaaatgaaa ctaaatcgtc agatcatatt ctgtacgctg gctgctttgg ctgaggaacg
     1021 aaaaccgttg gagtgtttag atgcctttgg agccactgga ataatgggat tacagtgggc
     1081 aaagcacctt ggaaatgcag tcaaagttac aattaatgac ttgaatgaaa actctgtgac
     1141 tttgattcag aaaaactgcc acttaaacaa attgaaagtg gtggtagaca gtgaggaaaa
     1201 ggaagagggt gatggtcttg aagactgcag cactgcgggg gacatccagg tgaccaggat
     1261 ggacgccaat gttctgatgc acctgagatc ttttgatttt atacacctgg acccctttgg
     1321 aacgtcggtg aactacctcg actctgcgtt cagaaacgta aggaaccttg gcatagtgtc
     1381 agtgacttcc acagacatca gctccttgta tgccaaggca cagcatgttg cccggcgtca
     1441 ctacggatgt aacattgtcc gaacagagta ttacaaggag ctagcggcca gaattgtcgt
     1501 agctgcagtg gcaagagctg cagcacggtg caacaaaggt gtggaagtgc tgtttgccgt
     1561 ggctctggag cacttcgtgt tggtagttgt gagggtctta agagggccca cttcagcaga
     1621 cgagactgcc aagaaaatcc agtacctgat ccactgccag tggtgtgagg agaggatatt
     1681 tcagaaggac ggtaacatgg tggaagaaaa cccatataaa cagctgccct gtaattgtca
     1741 tgggagcatg cctggcaaga cagcaataga acttgggcct ctgtggtcaa gttccctttt
     1801 caatactgga ttcctcaaga gaatgctatt tgaatctatt catcatggtt tggatgacat
     1861 tcagccccta ataaagacat tgatctttga atcagagtgt actccccaaa gccagtgttc
     1921 agtccatgca ccttcaaata ccaacaagca agaagaaaat ggtgtatttg ttaaaaccac
     1981 cgatgatacc acaatagata tttacagtgc acagggcaag agaaaaagta atgagatggc
     2041 cattaacgta gccaagaaac agaagacgga cgccagcact gcccaccctc ccttttatta
     2101 caacatccac aggcacagca tcaaagggat gaacatgccg aagttaaaaa aatttttgtg
     2161 ctgtctttcc caagcaggct ttcgagtaag ccggactcac tttgacccca tgggtatccg
     2221 taccgatgcc tctctgacac agttcaagtc tatcctgtta aagtacagca cccccacgta
     2281 cactggagga cagtcagaag gtcaggtgcc tgcacctgag gacacagtaa ccgacccggt
     2341 ggagctgtcc gtgaatgaca aagcggaagt gagtggctgc cggagatggt gactgcaaga
     2401 gggtttcttc tcagggttct ccatgatggc ccaagtctct gtacggctgc aatccttttt
     2461 tattctttca atttagtgag ataagataaa aaaaatttaa aaagcactgt tttcattcaa
     2521 aaaattcgct gtttctgact tggctggtgt gagagcattg ctttttaagt ttttattatt
     2581 ttaaagaaaa aaaatttaat aaaaacattt gaagccaaaa aaaaaaaaaa aaaaaaaaaa
     2641 aa
//
