LOCUS       NM_001033902            1824 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus tRNA methyltransferase 13 homolog (Trmt13), mRNA.
ACCESSION   NM_001033902 XM_575024
VERSION     NM_001033902.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC166503.1.
            
            On Sep 4, 2008 this sequence version replaced NM_001033902.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166503.1, SRR8487227.144429.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..1824
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /note="tRNA methyltransferase 13 homolog"
                     /db_xref="GeneID:499697"
                     /db_xref="RGD:1565211"
     exon            1..171
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..1512
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /EC_number="2.1.1.225"
                     /note="tRNA guanosine-2'-O-methyltransferase TRM13
                     homolog; coiled-coil domain containing 76"
                     /codon_start=1
                     /product="tRNA:m(4)X modification enzyme TRM13 homolog"
                     /protein_id="NP_001029074.2"
                     /db_xref="GeneID:499697"
                     /db_xref="RGD:1565211"
                     /translation="MEAPAPTTPAIGFPTDGRCNYFVEKKKRFCRMVVAAGKRFCGEH
                     AGSAEEENARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPKPDFFIQDINAGLKDET
                     EILEQLVPLSSLSEEQLETLIKKLRKASEGLNSTHEDHIMSHPALHDALNDPRNGDCA
                     VKHLKQQASILGNIEKLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAENVHFILVEKV
                     TTRFKVDGKHRKKNSVFERLQIDIQHLCLNRLPVLREGRLPVVGIGKHLCGVATDLAL
                     RCLVETYAASFKEKDEEPLAKRVKNDKTEKESNTLAKEGSEKDVPETRTPVAGIVIAL
                     CCHHRCDWRHYVGKEYFKALGLGAVEFYYFQRMSSWATCGMRTSLEASDVTAERKDAQ
                     KDEEEEHDDVGDRLTDGSTDSLPGTLTVEEKKKIGHLCKLLIDQGRLQYLQQKGFSPA
                     LQYYTDPLVSLENVLLTAVPAHLSSQEKNQSVKGNMNMMSSTSKK"
     exon            172..218
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            219..285
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            286..348
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            349..418
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            419..525
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            526..693
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            694..766
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            767..841
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            842..1271
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
     exon            1272..1798
                     /gene="Trmt13"
                     /gene_synonym="Ccdc76"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaggccaa aaggacccag cgtgatggag gctcctgctc cgacaacgcc cgcgatcggt
       61 tttccaactg acggtagatg caactacttt gtggaaaaga agaagcgctt ctgcaggatg
      121 gtggtggccg cggggaaaag gttctgtggt gaacacgctg gatcggcgga ggaagaaaat
      181 gctcggaaaa gaatcttatg tcctttagat ccaaaacaca cagtatatga agaccaacta
      241 gcaaaacatt tgaaaaaatg taattcaaga gagaagccta agcctgattt ctttattcaa
      301 gatataaatg caggattaaa ggatgaaaca gaaattcttg aacaattagt tccactttct
      361 tctctatctg aggagcagtt ggaaacctta attaagaaat tgagaaaagc aagtgaaggc
      421 ttgaactcta cacatgaaga tcacattatg tcccatccag cattacacga cgcccttaat
      481 gacccgagaa atggtgattg tgcagtcaag cacctgaaac agcaggcttc tattttaggt
      541 aacattgaaa aattaaagtt acttggtcca agaagatgct ttgttgagtt tggagcagga
      601 aaggggaaat tatctcactg ggttgatatt gccttaaaag atgctgaaaa cgttcacttc
      661 atcctggtag aaaaagtgac cacaagattc aaggtagatg gtaaacacag aaaaaagaac
      721 tcagtgtttg aaagacttca aattgatatc caacacttgt gcttgaacag gcttcctgtg
      781 ctaagagaag gaagactgcc tgtagtagga attgggaagc acctgtgtgg ggtggcaaca
      841 gatcttgcat tacgatgttt ggttgaaacc tatgctgcca gttttaagga aaaggatgaa
      901 gaacctttag ccaaacgcgt aaagaatgat aaaacagaaa aagaaagtaa cactttggcc
      961 aaggaaggaa gtgaaaaaga tgtcccagag acacggaccc ctgtggctgg cattgtcatt
     1021 gcgctctgtt gtcaccacag gtgtgactgg agacattatg tgggcaaaga gtatttcaag
     1081 gctcttgggc ttggcgcagt ggagttctac tatttccaga gaatgagtag ttgggcaacg
     1141 tgtgggatga ggacgtcttt ggaagcctca gatgttactg cagagagaaa agatgctcag
     1201 aaggatgagg aggaagagca cgatgatgta ggagacagac tcacggatgg cagcactgac
     1261 agtttgcctg ggactcttac tgttgaagaa aagaagaaaa taggacatct ttgcaaattg
     1321 ctgattgacc aaggccgact ccagtattta cagcagaaag gcttcagtcc tgccttacag
     1381 tactatacgg acccattggt gtctctggaa aatgtattat taactgctgt accggctcat
     1441 ctgtcatcgc aggaaaaaaa tcaatcagtg aaaggaaaca tgaacatgat gtcttccaca
     1501 agcaaaaaat aaataaatta tttttaaatt atattttgat agtcacaaaa atattcaccc
     1561 agttgtcgaa gtattccttt tcagcgggac tctttaaatt actttatcca tcagaccgtg
     1621 tagagctggg cgtatgagtc agacagttga cttggtcttc tgaaagatag aacatcagca
     1681 tataattaca gtacgaactc cgtgtcttaa tctggtaaac ttgtctttgg ttttatctga
     1741 taagttttca tttttttgag ctccagctgt aataaacagt agaagtttat aacaagaaaa
     1801 aaaaaaaaaa aaaaaaaaaa aaaa
//
