LOCUS       NM_001025652            1478 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus tRNA methyltransferase O (Trmo), mRNA.
ACCESSION   NM_001025652 XM_216401
VERSION     NM_001025652.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1478)
  AUTHORS   Kimura,S., Miyauchi,K., Ikeuchi,Y., Thiaville,P.C.,
            Crecy-Lagard,Vd. and Suzuki,T.
  TITLE     Discovery of the beta-barrel-type RNA methyltransferase responsible
            for N6-methylation of N6-threonylcarbamoyladenosine in tRNAs
  JOURNAL   Nucleic Acids Res 42 (14), 9350-9365 (2014)
   PUBMED   25063302
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097981.1.
            
            On Jul 22, 2005 this sequence version replaced XM_216401.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097981.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132291, SAMD00132292
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1478
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..1478
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /note="tRNA methyltransferase O"
                     /db_xref="GeneID:298072"
                     /db_xref="RGD:1305420"
     exon            1..133
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1353
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /note="nef-associated protein 1; thioesterase NAP1"
                     /codon_start=1
                     /product="tRNA (adenine(37)-N6)-methyltransferase"
                     /protein_id="NP_001020823.1"
                     /db_xref="GeneID:298072"
                     /db_xref="RGD:1305420"
                     /translation="MRGLEKQGPSATAAPCGCAQPALETGNLLTEPIGYLESCFSAKI
                     GTPRQPSICSQSRACLKIRKSIFNNPEHSLMGLEQFSHVWILFVFHKNGHLNYKAKVQ
                     PPRLNGAKTGVFSTRSPHRPNAIGLTLAKLEKVEGGAVYLSGIDMIHGTPVLDIKPYI
                     ADYDSPQNLEPQTKHHKLRAAGPSDATANSCDQQLLSGCEKAQPCHSTKEKPKCREHR
                     TSDENSQKFRDTSEIQHTLPEDRERAVDLALESSREETMDEPEDQLGPQELKSFLEEG
                     TDRPRKVEGALVLRGSSAETRWDASCHARTADRVPCSVVPSWVKEAPVATLQVRFTPH
                     AEMDLRKLSSGGASQTSFKYFHSAEEAKCAIEAMLSADPRSVYRRKLCEDRLFFFTVD
                     IAHVTCWFGDGFAEVLRIKLASEPVEVADPEESLVALGS"
     exon            134..308
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /inference="alignment:Splign:2.1.0"
     exon            309..466
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /inference="alignment:Splign:2.1.0"
     exon            467..1093
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /inference="alignment:Splign:2.1.0"
     exon            1094..1457
                     /gene="Trmo"
                     /gene_synonym="Nap1; RGD1305420"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgccaaagca cggaagcgga agcggaaatc agcggggggg cgcagcggcc tgtaaccatg
       61 cgcggcttgg agaagcaggg tccgagtgct acagcggccc catgtgggtg cgctcagccg
      121 gccctggaga cagggaatct tttaactgag ccaatagggt acttggaatc atgtttctca
      181 gccaagattg gtactccaag gcagccatcc atttgtagcc aatccagagc ctgtttgaag
      241 atcagaaaga gcatctttaa taatcctgaa cattccttga tgggcctaga acagttttct
      301 catgtttgga tcttgtttgt ctttcataaa aacggccatt tgaattacaa ggcaaaagtg
      361 caacccccta ggctgaacgg ggcaaagacc ggagtgttct ccacacggag cccccatcgc
      421 ccgaatgcaa taggactgac actggccaag ctggagaagg tggaaggtgg agctgtatac
      481 ctgtctggaa ttgacatgat acacggcaca cctgtgctag acataaagcc ctacattgcc
      541 gactacgact caccacagaa cttggagcca cagactaaac accacaagct gagggctgcg
      601 ggcccatctg acgccacagc taacagttgt gaccagcagc tgctctcagg gtgtgagaaa
      661 gcacagcctt gccacagcac caaggagaaa ccgaaatgcc gtgaacacag gacctcggat
      721 gaaaactccc agaagttcag agacacctca gaaatccagc acactttgcc agaggacaga
      781 gagagagcag tggatttagc cctggaatca agcagagagg aaaccatgga tgagcctgaa
      841 gatcagcttg gcccacagga gctgaagagc tttctggaag aaggcacaga tagaccaagg
      901 aaagtggaag gtgccttggt cctgcggggg agcagtgcag aaacacggtg ggatgcttcc
      961 tgccatgcca ggacagctga cagagtgccc tgcagtgttg tccccagctg ggtgaaggag
     1021 gctcctgtag ccactttaca agtccggttt actcctcatg cagagatgga tctgaggaag
     1081 ctcagttcag gaggtgctag tcagacgtcg tttaaatact tccattccgc agaggaagcc
     1141 aagtgtgcca ttgaggctat gctgtcagca gaccctcggt ctgtgtaccg gcggaagctc
     1201 tgtgaggacc gccttttctt ctttactgtg gacatagcac atgtcacgtg ctggtttggt
     1261 gatggctttg cagaggttct gaggattaaa ctggcttctg agcctgttga ggtggctgac
     1321 cctgaggagt ctttggtggc cttggggtct tgaggagcct agagtgtttt cagaagctcc
     1381 gttggtgtct ggatgtgccg gctcctgtca tctaactgct ttaatcggct ctgtttaaaa
     1441 tatttatgtg aaggaaaaaa aaaaaaaaaa aaaaaaaa
//
