LOCUS       NM_001127570            1757 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus thyroid hormone receptor interactor 6 (Trip6),
            mRNA.
ACCESSION   NM_001127570 XM_001069537
VERSION     NM_001127570.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Gu J, Shao R, Li M, Yan Q and Hu H.
  TITLE     MiR-485-3p modulates neural stem cell differentiation and
            proliferation via regulating TRIP6 expression
  JOURNAL   J Cell Mol Med 24 (1), 398-404 (2020)
   PUBMED   31730275
  REMARK    GeneRIF: MiR-485-3p modulates neural stem cell differentiation and
            proliferation via regulating TRIP6 expression.
REFERENCE   2  (bases 1 to 1757)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 1757)
  AUTHORS   Kuo JC, Han X, Hsiao CT, Yates JR 3rd and Waterman CM.
  TITLE     Analysis of the myosin-II-responsive focal adhesion proteome
            reveals a role for beta-Pix in negative regulation of focal
            adhesion maturation
  JOURNAL   Nat Cell Biol 13 (4), 383-393 (2011)
   PUBMED   21423176
REFERENCE   4  (bases 1 to 1757)
  AUTHORS   Solaz-Fuster MC, Gimeno-Alcaniz JV, Casado M and Sanz P.
  TITLE     TRIP6 transcriptional co-activator is a novel substrate of
            AMP-activated protein kinase
  JOURNAL   Cell Signal 18 (10), 1702-1712 (2006)
   PUBMED   16624523
REFERENCE   5  (bases 1 to 1757)
  AUTHORS   Li L, Bin LH, Li F, Liu Y, Chen D, Zhai Z and Shu HB.
  TITLE     TRIP6 is a RIP2-associated common signaling component of multiple
            NF-kappaB activation pathways
  JOURNAL   J Cell Sci 118 (Pt 3), 555-563 (2005)
   PUBMED   15657077
REFERENCE   6  (bases 1 to 1757)
  AUTHORS   Xu J, Lai YJ, Lin WC and Lin FT.
  TITLE     TRIP6 enhances lysophosphatidic acid-induced cell migration by
            interacting with the lysophosphatidic acid 2 receptor
  JOURNAL   J Biol Chem 279 (11), 10459-10468 (2004)
   PUBMED   14688263
REFERENCE   7  (bases 1 to 1757)
  AUTHORS   Cuppen E, van Ham M, Wansink DG, de Leeuw A, Wieringa B and
            Hendriks W.
  TITLE     The zyxin-related protein TRIP6 interacts with PDZ motifs in the
            adaptor protein RIL and the protein tyrosine phosphatase PTP-BL
  JOURNAL   Eur J Cell Biol 79 (4), 283-293 (2000)
   PUBMED   10826496
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC161996.1.
            
            On May 23, 2008 this sequence version replaced XM_001069537.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161996.1, SRR8487231.67829.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132270, SAMD00132277
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..1757
                     /gene="Trip6"
                     /note="thyroid hormone receptor interactor 6"
                     /db_xref="GeneID:686323"
                     /db_xref="RGD:1583180"
     exon            1..258
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     CDS             150..1592
                     /gene="Trip6"
                     /codon_start=1
                     /product="thyroid receptor-interacting protein 6"
                     /protein_id="NP_001121042.1"
                     /db_xref="GeneID:686323"
                     /db_xref="RGD:1583180"
                     /translation="MSGPTWLPPKQPEPSRVPQGRALPRGTLGPPTAHGATLQPHPRV
                     NFCPLPPEQCYQPPGVPEDRGPTWVGSHGAAQRLQGLPPDRGVIHPGSLDAEIDSLTS
                     MLADLDGSRSHAPRRPDRQAFEAPPPHAYRGGSLKPSGGAVPAPMLPASPYGGPTPAS
                     YATASTPAGPAFPVQVKVAQPVRGCGLPRRGASQASGPLPGPHFPLTGRGEVWGAGYR
                     SHREPGPGVKEGAAGVHNPAGGGRRGGHEPQGPLSQPPEEELERLTKKLVHDMNHPPS
                     GEYFGRCGGCGDDVVGDGAGVVALDRVFHTGCFVCSTCRAQLRGQHFYAVERRAYCES
                     CYVATLEKCSTCSEPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCI
                     EDFHRKFAPRCSVCGGAIMPEPGQEETVRIVALDRSFHIGCYKCEECGLLLSSEGECQ
                     GCYPLDGHILCKACSAWRIQELSATVTTDC"
     exon            259..386
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            387..512
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            513..896
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            897..990
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1160
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1339
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            1340..1460
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
     exon            1461..1728
                     /gene="Trip6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaagaaaaa aaaagccaga aaaagtttct ttgctggagt cccaaacggg gcgtggggcc
       61 gaaagggagg gaaggggctc aagggcccgg ccgctgggct tgtgggggtc ctgacctctg
      121 tctggagtgg agcaacccta ttccagacca tgtccgggcc cacctggctt cccccgaagc
      181 agccagagcc ctccagagtc cctcagggga gagcgctgcc cagaggaacc ctgggtccgc
      241 caacggccca tggagcaacg ctccagcctc accccagggt caacttttgc cccctcccac
      301 ctgaacaatg ttatcagcct ccgggggtac cggaagatcg ggggcctact tgggtgggat
      361 cccatggagc agcccagcgc ctgcaggggc tccctccaga ccggggagtc atccaccctg
      421 gaagtctgga cgctgagata gattcgctca ccagcatgct ggctgatctg gacgggagtc
      481 gcagtcatgc acctaggcga ccagacagac aggcttttga ggctcctcca ccccatgctt
      541 accgtggagg ctccctgaaa cccagcggag gtgctgttcc agccccgatg ctcccagcat
      601 ctccctatgg tggacctact ccagcctctt atgctaccgc gagcactcca gctggtcctg
      661 ctttccctgt tcaagtgaag gtggctcaac ccgtgagagg ctgtggactg cccaggcggg
      721 gggcttcgca ggcctctgga cctcttccag gcccccactt tcctctgaca ggtcgtggtg
      781 aagtctgggg agctggctat aggagccacc gagagccagg accaggggtt aaggagggag
      841 ctgctggagt tcataaccct gcaggaggag gaagaagagg tgggcatgag cctcagggcc
      901 ccttgagcca gcctccagag gaggagctgg agagactgac caagaagttg gtgcatgaca
      961 tgaaccaccc gcccagtggg gagtactttg gtcggtgtgg tggctgtggc gacgatgtgg
     1021 ttggtgatgg agctggggtt gtggccctgg accgtgtctt ccatactggt tgcttcgtgt
     1081 gttctacctg tcgggcccag ctccgaggcc agcacttcta tgccgtggag aggcgggcgt
     1141 attgtgagag ctgctatgtg gccacactgg agaaatgttc cacatgctct gaacccatcc
     1201 tggaccgaat cctgagggct atggggaagg cttaccatcc tggttgcttc acctgtgtgg
     1261 tgtgccaccg tggcctcgat ggcatccctt tcacagtgga tgccaccagc cagatccact
     1321 gcattgaaga tttccacagg aaatttgccc cacggtgctc agtgtgtggt ggggccatca
     1381 tgccagagcc aggtcaggag gagacagtga gaattgttgc tctggataga agtttccaca
     1441 ttggctgcta caagtgtgag gagtgtgggc tgctgctgtc ctctgaggga gagtgtcaag
     1501 gctgctaccc gctggatggg catatcttgt gcaaggcttg tagtgcctgg cgcattcaag
     1561 agctctcagc caccgtcacc accgactgtt gactgctcta agaaggacct gctgggatct
     1621 cagtccccct ctgttacctc ccctgacatc tacccttagt gtttgcacca aatgctgtct
     1681 cttcttcctc ccttcatgca ataataatca gtggagtgtt taaaagctaa aaaaaaaaaa
     1741 aaaaaaaaaa aaaaaaa
//
