LOCUS       XM_017594983            6915 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus TRIO and F-actin binding protein
            (Triobp), transcript variant X1, mRNA.
ACCESSION   XM_017594983
VERSION     XM_017594983.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017594983.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6915
                     /gene="Triobp"
                     /note="TRIO and F-actin binding protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 14 ESTs, 77 long SRA reads, 1 Protein"
                     /db_xref="GeneID:362956"
                     /db_xref="RGD:1308485"
     CDS             404..6244
                     /gene="Triobp"
                     /codon_start=1
                     /product="TRIO and F-actin-binding protein isoform X1"
                     /protein_id="XP_017450472.1"
                     /db_xref="GeneID:362956"
                     /db_xref="RGD:1308485"
                     /translation="MSMEQDTRALLPTQGTAWATASVPVARLQGPQGDSHQACSQEPH
                     SPPSAEAPYCDLPRCPPALQDPLHTTTCVGQSVDNLGLGLDQEPQRIGSPTTALPADP
                     RNRHRDPEAIPYLEGPAYSTDEHKDEDPNSNTSSSQDSNTPHDTSNSSSVQDWDTVER
                     PGVVPNRNRLTMMIPRRPQEGLRTDSAQKVTRSPARGDTAGQRKENSGSGGQSAGQHW
                     VKLRSESGYFSLERQRSGQTQASSGTPPSGPRTTTQASSAQRDVSQAASAQEAPQTSS
                     LPRNTQRDTQRSTPRTSSPSRVSQRDTPRIMSTQRKNTPLSSPLRPTPETLKTSAPED
                     GPHVTSPLCAQDSSLNRTTQRDSSRTSCAQRNNPRTSSPNRTTQRDNPRTSCAQRNNP
                     RTSSPNRTTQQDNPRTSCAQRNNPRTSSPSRTTQHDNPRTSCAQRDNPRTSSPNRTTQ
                     QDNPRMSCAQRNNPRTSSPNRTTQRDNLRTSCAQRNNPRTSSPNRTIHQDNPRTSCVS
                     QNTPRTSSTQVDKTTASCSRWEHLRSACTQRDNPRTLSQGCTQKDNPGPSSPHRATQG
                     SSSRNPSPHRTNKDIPWASFPLRPTQSDSSRTSSPSRTKQNQVPWASISLRPTQGDKP
                     QTSAPSKLAHNDPPQQYSPSLATSSSSSHNPGHPSASRTSSPLHPAPRGAPQTSLEPS
                     QPPCAVCIGHRDAPRASSPPRYFQYDPFPFFPDPRSSESESPHHEPPYMPPAVCIGHR
                     DAPRATSPPRHTQFDPFPFLPDTSDAENESPQHDPPQFPPPVCIGYRDAPRASSPPRQ
                     FPEPSFFQDLPRASTESLVPSTDSMHEPPHIPTPVCIGHRDAPSFSSPPRQAPEPSLF
                     FQDPPGTSMESLAPSVDSLHGSPLLLPQVCIGHRDAPRASSPPRHPPSDVGILAPSPP
                     PGSSGSRGSAPPGETRHNLEREEYTMLADLPPPRRLAQRVPEPQAQGSNEGRTRSPGR
                     AEVERLFGQERRKSEAPGAFQARDEGRSQRPSQGQSQLRRQSSPAPSRQVTKPSAKQA
                     EPTRQSRTGPPHPKSPEKHSEGDRQLQRIAPPARTSARPPERKAQIERHLESGYTGLR
                     QPLGGWQSREGLSGPQSPNRHPEKNWGSQEEGLSLGGWPELGGPSLEGIWRGPPQEHR
                     ERWGQSEAWEEPPSNGIQGGPPRGQGSLQELPRPHQPPPSPENSWAGPAECFCARQPE
                     AGTAMGWRAEGTSPHQYSAERPPDLDWRDLLGLLRAPEDGAWTRLPRLDWEGLLELLQ
                     ARLPQKDPTRHSRDPAKAPGPEPGSSDTEDTLKTESQTQPEGWAKATLANGHRPGQQS
                     ESPAQLPSPACTSTQWPTTKVTSGPETSPPVALEQIDHLESHSPPDLGPDLLNFKKGW
                     MSILDEPGEWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRNYG
                     FQIHTKDAVYTLSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSECNKENTLHGYGTQK
                     SSLKIGEQRTGSEVIGRGGPRKVDGSRQSLDYVELSPLTPSSPQRVRTLSRSTPERPS
                     KQEDLERDLAQRSEERRKWFESTDSRTPETPSGDGSRRGLGAPLTDDQQSRLSEEIEK
                     KWQELEKLPLRENKRVPLTALLNQGHSERRGPTSDSHEALEKEVQSLRAQLEAWRLRG
                     EAPQNAPRLQEDSHIPPGYISQEACERSLAEMESSHQQVMEQLQRHHERELQRLQQEK
                     EWLLAEETAATASAIEAMKKAYQEELSRELSKTRSLQQGPDSLRKQHQLDMEALKQEL
                     QVLSERYSQKCLEIGALTRQAEEREHTLRCCQQEGQELLRHNQELHSHLSEEIDRLRS
                     FIASQGTGNSCGRSNERSSCELEVLLRVKENELQYLKKEVQCLRDELQVIQKDKRFTG
                     KYQDVYVELNHIKTRSEREIEQLKEHLRLAMAALQEKEAVRNSLAE"
     polyA_site      6915
                     /gene="Triobp"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcaggggcgt ggtcttacac gcacctcctg gcatcgtttt tgattcattg ttaaaataga
       61 ggctgtgact ctggcactag tacctccatc gccccgtgag tggaaacccg agtccaggga
      121 ggatttttct tccagtttgt tgggggtcgt gaagaaaact ggagtcagaa ggggctcatg
      181 aagaacccct gtttagcttc cctggaaaag gagccacatt ctccatccaa gaggacgctc
      241 ctctcggtga ctgaaccaaa aaagaacagc ccaggcccca cctagagagc cagccactgt
      301 ggctcacctg ctatggagga agcgactatg aatgttccaa gtgtacactc tgaagccagt
      361 gtatctgcca agagccactg tctgagctgc tgtcaccctg gggatgtcca tggagcaaga
      421 caccagagca cttctgccca cccagggcac tgcctgggct acagcctctg ttccagtcgc
      481 caggctccag ggtccccagg gagactccca ccaggcctgc tctcaggagc ctcacagccc
      541 tcccagtgct gaggcaccct actgtgacct gcctcgctgc ccaccggccc tgcaggaccc
      601 actccacacc accacctgtg ttggccagtc tgtggacaac cttggtcttg gccttgacca
      661 ggagcctcag aggattgggt ccccaacaac agctctccct gcagacccaa ggaacaggca
      721 ccgggacccc gaggcgatac cctatctgga gggcccggcc tatagcactg acgaacacaa
      781 agacgaggac cccaactcca ataccagctc cagccaagac agcaataccc ctcatgatac
      841 cagcaattcc tcttctgtgc aggattggga cactgttgag aggcctgggg tggtccccaa
      901 caggaacaga ctcaccatga tgatcccaag gaggcctcag gaggggttga gaactgacag
      961 tgctcaaaag gtcaccaggt ccccagccag aggagacaca gcaggccaga ggaaggagaa
     1021 ttctggcagt ggtggacaga gcgctggcca gcactgggtg aagctgcgat cagaaagcgg
     1081 ctacttctct ctggagcgac agcgctcagg gcaaacccag gcttcctctg ggacaccacc
     1141 aagcggacct cggaccacca cccaggcttc ttctgctcaa agggatgttt cccaggctgc
     1201 ttctgcacaa gaagctcccc aaacctcctc tctgccccga aacacccaaa gggatacaca
     1261 gcgaagcacc cctagaactt cctctccttc aagagtatcc cagagggata ctcctagaat
     1321 catgtctacc cagcgaaaga atactccact ttcctctccc ctcagaccca ctccagagac
     1381 cctgaagacc tctgctccag aagatggtcc ccatgttaca tcacctctgt gtgcccaaga
     1441 ctcctctctc aatagaacca cccagaggga cagctctcga acttcctgtg cccagagaaa
     1501 caatcccaga acctcatctc ccaacagaac cacccagcgt gataacccca gaacttcttg
     1561 tgcccagagg aacaatccca ggacctcctc ccccaacaga actacccagc aggataaccc
     1621 cagaacttct tgtgcccaga gaaacaatcc cagaacctca tctcccagca gaaccaccca
     1681 gcatgataac cccagaactt cttgtgccca gagggacaat cccaggacct catctcccaa
     1741 cagaaccacc cagcaggata accccagaat gtcttgtgct cagagaaaca atcccaggac
     1801 ctcctctccc aacagaacca cccagcgtga taacctcaga acttcttgtg cccagagaaa
     1861 caatcccagg acctcctctc ccaacagaac tatccatcag gataacccca gaacttcctg
     1921 cgtatcacag aataccccca ggacctcttc tactcaagta gacaagacta cagcttcctg
     1981 cagcagatgg gaacatctcc gaagcgcctg cacccaacga gacaacccca ggaccctctc
     2041 tcaaggctgt acccaaaagg acaatccagg cccatcctct ccccaccgtg ccactcaggg
     2101 gagtagctcc aggaatcctt ctccccaccg taccaacaaa gatatcccct gggcttcctt
     2161 tccccttcgg ccaacccaaa gtgacagttc ccgaacctca tcaccatcac gcaccaaaca
     2221 aaaccaggtg ccttgggcat ccatttctct ccggccaacc caaggggaca agcctcaaac
     2281 ctcagctcct agcaagctag ctcataatga ccctccccag cagtattcgc catccctggc
     2341 cacctcctcc tcctcctctc ataaccctgg ccatcccagt gcctctagga cttcatcgcc
     2401 tcttcaccca gcaccacgag gggctcccca gacctctttg gagccctctc agccaccatg
     2461 tgctgtgtgc attgggcacc gggatgcacc tcgcgcctct tccccgccgc gctattttca
     2521 gtatgaccct ttcccctttt tcccagatcc ccgctcgtct gagagcgaat caccccacca
     2581 tgaacccccc tacatgcccc ctgcagtgtg tattgggcat cgtgatgccc cccgggccac
     2641 ttcaccacct cgtcacaccc agttcgatcc cttccccttc ctcccagaca catcagatgc
     2701 tgagaatgag tccccccagc acgatcctcc tcagtttccc ccaccagtgt gcatcgggta
     2761 ccgcgatgct ccgcgggcct cttccccacc acgccagttc ccagagccct ccttcttcca
     2821 agatctcccc agggccagca cagagagcct tgtcccttcc acagactcta tgcatgagcc
     2881 tccccacatt cccactcctg tgtgtattgg gcacagagac gctccctcct tctcctcccc
     2941 accacgccag gcccctgagc cttccctctt tttccaggat cctcctggga ccagtatgga
     3001 gagtcttgcc ccttccgttg actctttgca tggctcccca ctgctgctcc cacaagtatg
     3061 catcggacat cgagatgcac ccagagcctc ctctcctccc cgccacccac ctagtgacgt
     3121 aggtatcctg gcaccctcac ctccaccagg tagctcaggc tcccggggct cagcaccccc
     3181 aggggagacc agacataact tggagaggga agagtacacc atgctggctg acctgccccc
     3241 acccaggagg ctggctcaga gggtgccaga gccccaggca cagggcagca acgagggccg
     3301 tacccgcagc cctggccgag cagaggtgga gcgcctcttc gggcaagagc gcaggaaatc
     3361 ggaggcaccg ggggccttcc aggctcggga tgagggacgg tcacagcggc ccagccaagg
     3421 tcagagccaa cttcgaagac agtccagtcc tgcccccagc aggcaggtga ccaaaccttc
     3481 tgccaagcag gcagagccaa ctcggcagag ccgaacagga cctccacatc ctaagagtcc
     3541 ggagaagcat tctgagggag accggcagct ccagaggatc gcaccacctg ccaggacatc
     3601 agccaggcct cctgagagga aggctcagat agagaggcat ctggagagtg gctacacagg
     3661 cctgaggcag cctctgggag ggtggcagag ccgggagggg ctgtcaggac cccaaagtcc
     3721 taacagacac ccagaaaaga actggggcag ccaggaggag ggcctaagtc tgggaggctg
     3781 gccggaactt gggggtccca gcctggaggg gatatggagg ggccctcccc aggaacacag
     3841 ggaaaggtgg ggacagtcag aggcctggga ggagcctccc agtaatggaa tacagggggg
     3901 gcccccaagg ggccaaggta gccttcagga attgcccagg ccccaccagc ctccaccttc
     3961 cccagagaac tcctgggcag gcccagcaga atgcttttgt gctcggcagc ctgaagccgg
     4021 cactgctatg ggctggaggg ctgagggaac atccccacac cagtatagtg ctgagaggcc
     4081 acccgactta gattggaggg acctgctagg ccttctccgg gcacctgagg atggggcctg
     4141 gacccggctc ccaaggctgg actgggaagg cctcttggag ctcctgcagg ctagactgcc
     4201 ccaaaaagac ccgactaggc actcgcgtga cccagccaaa gctccaggac cagagccggg
     4261 ttcctcagac acagaggaca ccctgaagac agagtcgcag acccagcctg aaggatgggc
     4321 caaggccacc ctagccaatg gacacaggcc tggccagcag tcagagagcc ccgcacagct
     4381 acccagccct gcctgtacct ccacccagtg gccaacaacc aaagtgacaa gtggaccaga
     4441 aacttcacct ccggttgctc tggagcagat agatcaccta gaaagccaca gcccaccaga
     4501 cctggggccc gatctgctca acttcaagaa gggatggatg tcgatcttgg atgagcctgg
     4561 agagtggaaa aagcattggt ttgtgctgac agattcaagc ctcaaatatt acagagactc
     4621 cacggctgag gaggccgatg agctggatgg ggagatcgac ctgcgatcct gcacggacgt
     4681 cacagaatat gcagtccagc gcaactatgg cttccagatc cataccaagg atgctgtata
     4741 taccttgtcg gccatgacct cgggcatccg gcggaactgg attgaggctc tcaggaagac
     4801 tgtgcgtcca acttcagccc cagatgtcac caagctctca gaatgcaata aggaaaacac
     4861 actgcatggc tacggcactc agaagagctc cctgaagata ggggagcagc ggacgggctc
     4921 tgaagttatc ggccggggtg gtcctcgaaa ggtggatgga tcacggcagt cactggacta
     4981 cgtggaactc tctccattaa cgccaagctc cccacagcgc gtgcgtactc tgtcccgctc
     5041 cactcctgaa cgcccaagca aacaggagga tctggagcgg gacctggcac aacgctctga
     5101 ggaaagacgc aagtggttcg agtccacgga cagcaggacc ccagagacgc ccagtggtga
     5161 tgggtctcga aggggcctgg gtgccccact gactgatgac cagcagagca ggctcagtga
     5221 ggagattgag aagaagtggc aggaactgga aaagctgccc ctgcgggaga acaagcgagt
     5281 gccgctcact gccttgctca accaaggcca cagtgagcgt cggggaccta caagtgacag
     5341 ccatgaggcc ctggagaagg aggtccagtc tcttcgtgcc cagctggagg cttggcgtct
     5401 ccgaggggaa gctcctcaga atgcacccag actccaggag gacagccata tccctccagg
     5461 ctacatctca caggaagcct gtgagcgcag cctggcagag atggagtcct cacaccagca
     5521 ggtgatggag cagctgcagc ggcaccatga gcgagagctg cagaggctgc agcaggagaa
     5581 ggagtggcta ctggctgagg agacggcagc cacggcctca gccattgaag ccatgaagaa
     5641 ggcttatcaa gaagagctaa gccgggagct gagcaaaaca cggagtctcc agcagggccc
     5701 agatagcctt cggaagcaac accagttgga catggaggcg ctgaaacagg agctgcaggt
     5761 gctgtctgag aggtactcgc agaagtgcct ggagatcggg gccctgacaa ggcaggcgga
     5821 ggagcgagag cacaccctgc ggtgctgcca gcaggagggc caggagctgc tgcgccacaa
     5881 ccaggagctg cactcccacc tgtctgagga gatcgaccgt ctgcgcagtt tcattgcctc
     5941 tcagggcaca ggcaacagct gtgggcgcag caatgagagg agctcctgtg agctggaggt
     6001 gctgctgcga gtgaaggaga atgaactcca gtacctgaaa aaggaggtgc agtgtctccg
     6061 ggacgaactc caggtgatac agaaggacaa gcgcttcacg ggaaagtacc aggacgtgta
     6121 tgtggagctg aaccacatca agactcggtc agagcgtgag atcgagcagc tgaaggagca
     6181 cctgcgcctg gccatggctg ccctgcagga gaaggaggct gtaaggaaca gcttggctga
     6241 gtagaggtcc ctgtggttcc catcagctga ggaccctcca gccccagggg accagccacc
     6301 ctccttctct ggcagaagtc agaagccaag ctttctcccc accctgggtc acatgtgcac
     6361 tcacaccaca cacacacaca cacacacaca cacacacaca cacacacaca tatacacata
     6421 tatgcacaga cacaccctgc ggatctgagc tcgtcccttg cacagggtct taccttgcac
     6481 cttcttcagg attttatatg tgaagagatt tttatataga tttttttccg cctttttttt
     6541 tctaaaacat ttgaactttt taaaaaggca gttctcgatg atgtgtgcct caagcactgg
     6601 ctcctgttcc tctctgatcc ctggcatggc cctccttccg accctggttt ctcacaaagg
     6661 cccaagcagg gtcagggtga ttgaccagag agagaaggca gggagcagcc ctctcttcct
     6721 gccctacctc tactaaccac ttcctgccct ggcctctgga catggggacc agggggcaga
     6781 gggaggagcc agtagctgtc cccatagttc cactcctctg aggggtgctg agtgaggacc
     6841 accagtgcca cccatgaaga cgcttctcct ctgttccatg agtcatccta acttaataaa
     6901 accttccggc aacta
//
