LOCUS       NM_001191690            1557 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus tripartite motif family-like 2 (Triml2), mRNA.
ACCESSION   NM_001191690 XM_224883
VERSION     NM_001191690.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1557)
  AUTHORS   Kunarso,G., Wong,K.Y., Stanton,L.W. and Lipovich,L.
  TITLE     Detailed characterization of the mouse embryonic stem cell
            transcriptome reveals novel genes and intergenic splicing
            associated with pluripotency
  JOURNAL   BMC Genomics 9, 155 (2008)
   PUBMED   18400104
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Aug 31, 2022 this sequence version replaced NM_001191690.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760389 [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            inferred exon combination        :: based on alignments, homology
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000016.1  55693300-55693379   c
            81-327              JAXUCZ010000016.1  55687695-55687941   c
            328-423             JAXUCZ010000016.1  55687284-55687379   c
            424-618             JAXUCZ010000016.1  55685752-55685946   c
            619-759             JAXUCZ010000016.1  55683321-55683461   c
            760-782             JAXUCZ010000016.1  55680188-55680210   c
            783-883             JAXUCZ010000016.1  55679934-55680034   c
            884-1557            JAXUCZ010000016.1  55677142-55677815   c
FEATURES             Location/Qualifiers
     source          1..1557
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q12.1"
     gene            1..1557
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /note="tripartite motif family-like 2"
                     /db_xref="GeneID:290766"
                     /db_xref="RGD:1565382"
     exon            1..80
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     exon            81..327
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     CDS             139..1431
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif family-like protein 2"
                     /codon_start=1
                     /product="probable E3 ubiquitin-protein ligase TRIML2"
                     /protein_id="NP_001178619.1"
                     /db_xref="GeneID:290766"
                     /db_xref="RGD:1565382"
                     /translation="MSQVPKPHLPCSITEEPHCGTHPEPSQLFSDEDQIIISSKCFQS
                     PEHKRHEACGIQESAEYYRKLFQETLVTLKEKLEAAACLLAEERERMVTIQEEEQSFK
                     EMIEAEYKMIFQLLTEGKKAPFSSQPGCKFDLNLNGPNQNQLMTFGTELMQKSQKMLQ
                     RLSHLGSENMGKLKASEAWLSEHLCSLQKIITDLERNCGESAVALLQNAECYLKRSES
                     ILLQSLEPAQITDLSACRIIGTSNVLLRLQRHITLDPDTAHPSLVVSEDLRHVAFRDT
                     PKTGPDTPRRFDFSASVLGAESFDSGRHYWEVAVGQATQWQVGICDCTERTNSIPGTS
                     GDKVLLMGSLMGADCTLWVFPPLRKVWLRKQMYKVGVFLDCECGQVSFYNVTEQSLIY
                     SFSALTFRGAVKPIFSLCITNGDRSSDSLTVCPPQTHP"
     exon            328..423
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     exon            424..618
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     exon            619..759
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     exon            760..782
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     exon            783..883
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
     exon            884..1557
                     /gene="Triml2"
                     /gene_synonym="RGD1565382"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctttgcaca gaagtctctg gtctccactg gctgtgatgt ctttccctaa aggaaatcct
       61 taagacttca ggaaaaggag ggaagaggtc cacatcagaa acaagcaacc tagtcttcat
      121 atggtggcac tgaccaaaat gtcccaagtg cccaagcccc acttaccatg cagcatcaca
      181 gaggagccac actgtgggac acacccggaa ccatcgcagc tcttcagtga cgaggaccaa
      241 atcataattt ccagcaaatg tttccaatca ccagagcaca agcggcatga ggcatgtggt
      301 atccaagaat ctgctgagta ttataggaag ttattccagg aaaccctggt tacactgaag
      361 gagaagcttg aagcagctgc atgcttattg gctgaagagc gagagagaat ggtgacaatt
      421 caggaagagg aacagagctt taaagagatg atcgaggccg agtataagat gatattccag
      481 ttactgactg aagggaagaa agcgccattt tcaagccagc caggctgcaa atttgacctg
      541 aacttaaacg ggcctaacca gaaccagctg atgacgtttg gcactgagct catgcagaag
      601 tctcaaaaaa tgctacagag acttagccac ctggggagcg agaacatggg caaactgaag
      661 gcgagcgaag cctggctttc tgagcacctc tgcagcctcc agaagatcat cacagaccta
      721 gagcggaact gtggagaatc tgccgttgca ctgctccaga atgcagagtg ctatttaaaa
      781 aggagtgagt ctatactgct tcagagccta gagccagctc agataacaga cctgagtgca
      841 tgccggataa tcgggacaag caatgttctc ctgaggctcc aaagacatat tactctggac
      901 ccagacacag ctcacccctc cctagtcgta tctgaagacc tgagacatgt ggcattccga
      961 gacacaccaa aaactgggcc tgacactcca aggagattcg acttcagcgc ttcagtgttg
     1021 ggtgcggaga gcttcgactc agggaggcat tactgggaag tggctgtggg ccaggcgacc
     1081 cagtggcagg tggggatatg tgactgtaca gaaagaacga acagcattcc tgggacttcc
     1141 ggagataaag tcttgctcat ggggtccctg atgggggctg attgtaccct ctgggtcttt
     1201 ccccctttaa gaaaggtctg gctgagaaag caaatgtaca aagttggagt cttccttgac
     1261 tgtgaatgtg ggcaagtatc attctacaat gtgacagagc aatccctcat ttacagtttc
     1321 tctgccctca ccttccgagg agcggttaaa ccaatatttt ctctttgtat tacaaatgga
     1381 gacaggagtt cagactctct cactgtctgt ccccctcaga ctcatccctg aaatgctgcc
     1441 catagctcat cttcctgcat gtgaaaccca agatcaaaag ggacccgaaa ataagatcca
     1501 gactttgtga agactatgta attagcccaa tagaatccag taaatccatt tgactta
//
