LOCUS       XM_017600368            1887 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif family-like 1
            (Triml1), transcript variant X1, mRNA.
ACCESSION   XM_017600368
VERSION     XM_017600368.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017600368.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017600368.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1887
                     /gene="Triml1"
                     /note="tripartite motif family-like 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:290767"
                     /db_xref="RGD:1305337"
     CDS             148..1563
                     /gene="Triml1"
                     /codon_start=1
                     /product="probable E3 ubiquitin-protein ligase TRIML1
                     isoform X1"
                     /protein_id="XP_017455857.1"
                     /db_xref="GeneID:290767"
                     /db_xref="RGD:1305337"
                     /translation="MSVHEKISTADLMENLREELTCFICLDYFSSPVTTECGHSFCLT
                     CLLKSWEEHNTPLSCPECWRTLGAPHFQANERLGRLANIGRQLRCQVLQSEDEQSNSG
                     RTPGPSRVFSDDEQSVINFSPPNHGMNRAYFSSEAEEQHKEKLQDIVNILRKRKKEAQ
                     AILNHEKERVMLCKQEETKTCKQVVVSEYMKMHQFLKEEEQLQLQLLEKEEKENVKKL
                     RENEIHLTQQVRRINKMIGRIESICQNLTLESFEEVRGAMDRYESLLFQCPETTITEL
                     SLCRITGMREMLRKFSTDITLDPATANAYLLLSDDLKSVRYGGTKQQLPDNPERFDQS
                     ATVLGAQIFTCGRHYWEVEVGKKTEWEVGICKDSVNRKGNLPKPPGDLFSLIGLKIGD
                     DYSLWVSSPLKGQHVREPVHKVGVFLDYDSGHIAFYNVTDESLIYSFPPSSFHEALRP
                     IFSPCLPNEGTNTDPLIICHI"
ORIGIN      
        1 ctttgtgctg gagaacatgt atcatttggt gtactcaggc acggaggaga tcaagagtct
       61 cttgtgacaa gcacacagct ccggctcacc cagctgtgac ggaagaggac tcctgtaatc
      121 ccagactaga agtgttgcct tgtcctgatg tctgtccatg agaaaatttc cacagcagat
      181 ttgatggaga acctcaggga agagctcacc tgtttcatct gcttagatta ttttagcagt
      241 ccagtgacca ccgagtgtgg gcacagcttt tgtctgacgt gcctcctgaa gagctgggag
      301 gagcacaaca cacctttgtc ttgtcccgag tgctggagga ctttgggagc ccctcatttc
      361 caagctaatg agcgcctggg acgactggct aacattggaa gacagctcag atgccaggtg
      421 ctgcagagcg aggacgagca gagcaacagt gggagaacac cggggcccag tagggtgttc
      481 tctgacgatg agcagagtgt cattaatttc tcacctccaa atcacggcat gaacagggca
      541 tatttctcaa gtgaggctga ggagcagcac aaagaaaaac tccaggacat cgtaaatatt
      601 ttacggaaaa ggaagaagga agctcaagcc attctgaacc atgagaagga gcgtgtaatg
      661 ctgtgtaagc aggaggagac aaagacctgt aagcaggtcg tcgtgtctga gtacatgaag
      721 atgcaccagt tcctgaagga agaggagcag ctccagctcc agcttctgga gaaggaggaa
      781 aaggagaacg tgaagaagct gagggaaaac gagatccatc tgacccagca agtccgccgc
      841 atcaacaaaa tgattggtcg gatcgagtcc atctgtcaga acttgacttt agagtctttt
      901 gaggaagtca gaggagccat ggatcggtat gagtccctgt tgtttcagtg tccagagaca
      961 accatcacgg aactgagtct gtgtcgcatc accgggatga gggagatgct gagaaaattc
     1021 agcacagata taactctaga tccagccaca gccaacgctt acctactttt gtccgatgat
     1081 ctcaaaagtg tgcgatacgg agggaccaaa cagcaattac ctgacaaccc cgagcgattt
     1141 gatcagtctg caactgtgtt gggagcccag atcttcacct gtgggagaca ctactgggag
     1201 gtggaagtgg gaaagaagac ggagtgggaa gtgggtatct gcaaggactc tgtgaacaga
     1261 aaggggaatc tccccaaacc tcctggggac ctcttctcac tcataggctt aaaaattggt
     1321 gacgattata gtctctgggt ttcatcaccc ctgaaaggtc aacatgtccg agagccagtg
     1381 cataaagttg gtgtgttctt ggactatgac tctggacaca tagcattcta caatgtgaca
     1441 gatgagtccc tcatctacag cttccctccg tcctctttcc atgaagctct cagacctatc
     1501 ttttctcctt gtcttccaaa tgagggaaca aatacagacc ctcttatcat ctgccacatc
     1561 tgacagaaca tcccctgaac cttccttcag tgaagacaag gtcaaggaga cactaaagtg
     1621 gttactgcat tcaaagacat catacctcag attacctgga aaaaatatcc tccctcccca
     1681 aagactttcc acaaacctag ttctgcaatg aagagccaat taaaaatcta ttcaacacca
     1741 agactagaaa gatggcaccc tgcttttaat ccagttatct gagcggcact gtgtgtgctg
     1801 gccactcaac atacagacag cactgttagt atcctgtttt acctctctgt cataggaaag
     1861 ctatctaaat atatggcatt tttttca
//
