LOCUS       NM_001408610            1942 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus tripartite motif protein 80 (Trim80), mRNA.
ACCESSION   NM_001408610 XM_017597740
VERSION     NM_001408610.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jun 21, 2022 this sequence version replaced XM_017597740.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091694.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                JAXUCZ010000010.1  101181844-101181910
            68-111              JAXUCZ010000010.1  101182013-101182056
            112-776             JAXUCZ010000010.1  101182327-101182991
            777-872             JAXUCZ010000010.1  101186819-101186914
            873-1106            JAXUCZ010000010.1  101187108-101187341
            1107-1269           JAXUCZ010000010.1  101188185-101188347
            1270-1332           JAXUCZ010000010.1  101188527-101188589
            1333-1942           JAXUCZ010000010.1  101189513-101190122
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..1942
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /note="tripartite motif protein 80"
                     /db_xref="GeneID:287824"
                     /db_xref="RGD:1311352"
     exon            1..67
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     CDS             15..1886
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /note="gene overexpressed in astrocytoma; tripartite motif
                     protein 47; tripartite motif protein 47-like; E3
                     ubiquitin/ISG15 ligase TRIM25"
                     /codon_start=1
                     /product="tripartite motif protein 80"
                     /protein_id="NP_001395539.1"
                     /db_xref="GeneID:287824"
                     /db_xref="RGD:1311352"
                     /translation="MKQQPQRTVRRRRSPVHRAAKYLAVIDMQKISRPTQDKSPSELS
                     TQSSRTSLQLLMSSNSSQHLLEDQVLCPICLDVFRNPVTTACGHNFCMTCLQSFWDHQ
                     ADTGETYYCPQCREAFPSRPRLCKNVILGEMVACFTLAKSQTSGPLWGLAGPTDVPCD
                     FCSPQKLKATKSCLQCMASLCEKHLHSHFEDPLFQEHQLLDPVWDLKNRLCRKHRKLR
                     QMYCRTEGSCVCGACLLEEHQNHDTTPLEDERARKEVEVRKIQANVENQMLIIASDSQ
                     KHQGRVSFLSKLIQTMREEVNTCFSEILHEVKQLQMKVLDFVENEETVALGMLGNSMQ
                     QSHSRLLKLEGDSVWLHGLLANKSDEQFLQEFPTLKHFPACVEPLLGTNCEETQSFLQ
                     LPETLAQLRIRLMDIGLNFINQLLLKGIRMNSYEVLPATVDRKTLLQNYCNLNFDSSM
                     ASEELFLFKETHSVLNLGILLEPSTTSPLPGFKQWPQVLCCPGLSEGCHYWETEVSDS
                     WMCLGVTYRRNPSMSGRHRRNIVYLLGRNPYSWCLEWDSLKFSVWHNNTQTVLHGSYH
                     HTLGVALDFRAGCLSFYGVAGDVSLLYRFLTSFLEPLYPAVMVSSGASLTLKQYPEA"
     exon            68..111
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            112..776
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            777..872
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            873..1106
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1269
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..1332
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
     exon            1333..1942
                     /gene="Trim80"
                     /gene_synonym="Trim47; Trim47l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggacaggga gaccatgaaa cagcagccac agagaacggt gagaagacgg cggtcaccag
       61 tccacagggc agcgaagtat ctggctgtca tagacatgca gaagatctca cgaccaaccc
      121 aggacaaatc cccctcagag ctctctaccc agtcctccag aacctcactc cagctcctga
      181 tgagcagcaa cagcagtcaa cacttgttgg aagaccaagt cctctgtccc atttgcctgg
      241 atgtgttccg caacccggtc accaccgcct gcggccacaa cttctgcatg acatgccttc
      301 agagtttctg ggaccaccag gctgacactg gagagactta ctattgcccc cagtgcagag
      361 aggcctttcc gagcaggccc cgcctctgca agaacgtcat tctcggagag atggtggctt
      421 gtttcaccct ggccaagagc cagacctcag ggcccttgtg gggcctggct ggccccacag
      481 atgtgccctg tgacttttgc tctcctcaga agctgaaggc aaccaagtcg tgcctgcagt
      541 gcatggcttc cttgtgcgag aagcatctgc acagccattt tgaggacccg ttgttccagg
      601 aacaccagct gttggacccg gtgtgggacc tcaagaaccg cttgtgccgt aagcatcgca
      661 agctccggca gatgtactgc cgcaccgagg gcagctgcgt gtgcggggcc tgcctcctgg
      721 aggagcacca gaaccacgac acaaccccgc tggaggatga acgggcccgc aaggaggtgg
      781 aagttcggaa gattcaggcc aatgtggaga atcaaatgct aatcattgcc tcggacagcc
      841 agaaacacca gggacgagtg agtttcctct cgaaactgat tcagacgatg cgagaagagg
      901 tgaacacctg cttctcagag atcctccatg aggttaaaca gctgcagatg aaggtcttgg
      961 attttgtgga gaatgaggag acagttgccc tgggaatgct gggtaactcc atgcaacaaa
     1021 gccacagccg gctcctgaag ttggaggggg acagcgtctg gctccacggc ctgctggcca
     1081 acaagagcga tgagcagttt ctacaggagt tccccacact gaagcacttc cctgcctgcg
     1141 tggaaccctt actaggcacc aactgtgagg agacacagag cttcctccag ctgccagaga
     1201 ccctggccca gctccgcatc aggctgatgg acataggtct taacttcatc aaccagctgc
     1261 tcttgaaggg catcaggatg aactcctatg aggtgctgcc agcaactgtg gacagaaaga
     1321 cactactcca gaattactgc aacctgaact ttgactcctc catggccagc gaagagctgt
     1381 tcttgttcaa ggaaacgcac tcggtgttga acttgggcat ccttctggag ccctcgacca
     1441 ccagcccttt accgggcttc aagcagtggc cccaggttct gtgctgccca ggcctgtcgg
     1501 aaggctgtca ctactgggag accgaggtgt ccgactcgtg gatgtgcctg ggagtcacct
     1561 accgtcgcaa cccttcgatg agcggtcgcc accgtcgcaa catcgtctac ctgctgggcc
     1621 gcaaccccta ttcgtggtgt ctggagtggg actctctcaa gttctccgtg tggcataaca
     1681 acacgcagac ggtgctgcac ggctcctacc accacacgct cggcgtagcg ctggacttca
     1741 gggccggctg cctgtccttc tatggcgtgg cgggcgacgt gagcctgctc taccgcttcc
     1801 tcacctcctt cctcgaacct ctgtaccccg cggtcatggt cagcagcgga gcctcgctca
     1861 cactcaagca gtaccccgag gcataggcag cgcccgccgg cccaggctgg ctgctaataa
     1921 agttagactc tacgtaccgc ta
//
