LOCUS       XM_056984904            1188 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif-containing 75 like,
            pseudogene 1 (Trim75l-ps1), mRNA.
ACCESSION   XM_056984904
VERSION     XM_056984904.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056984904.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 3 indels
            internal stop codons :: corrected 2 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-111               JACYVU010000279.1  4640174-4640284
            112-112             "N"                1-1
            113-213             JACYVU010000279.1  4640285-4640385
            214-215             "NN"               1-2
            216-1098            JACYVU010000279.1  4640386-4641268
            1099-1099           "N"                1-1
            1100-1188           JACYVU010000279.1  4641269-4641357
FEATURES             Location/Qualifiers
     source          1..1188
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1188
                     /gene="Trim75l-ps1"
                     /note="tripartite motif-containing 75 like, pseudogene 1;
                     The sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: inserted 4 bases in 3 codons; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 Proteins"
                     /db_xref="GeneID:502072"
                     /db_xref="RGD:1565534"
     CDS             1..1188
                     /gene="Trim75l-ps1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 4 bases in 3 codons;
                     substituted 2 bases at 2 genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:31..33,aa:OTHER)
                     /transl_except=(pos:505..507,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: tripartite motif-containing
                     protein 75"
                     /protein_id="XP_056840884.1"
                     /db_xref="GeneID:502072"
                     /db_xref="RGD:1565534"
                     /translation="MAQAEVLARLXKETRCSICLDDRTKPVTIKCEHNFCQXCIKDCW
                     AKHPAMFSCPVCQHQCQHRTLRSNAQLXSKRSKSKMQEPSTSCEKHNQFFSVFCEDDL
                     QLLRDQCAKSESHRYYEVTPSTEAASLCRKNLQGYINILKRQVEEVQELISRQNRITL
                     AQREQAEAXRSELTSKFEQLLRFLHCEEQAAFSGLEEEEEKKEKKLFGNIAPLECYGS
                     VLRDLLSQVMLTGGLSEAKVLFTVKDFYLKAMSHQPNHFPIQLREAYNFPLQYSALWK
                     VIQQFTDHVTLDPKTAHPNLLISEARTCVTYTKERQCVPGFSRFTKSPVMLGIPRFNS
                     GRHFWEVQGGKKLEWAVGICKADLSIGERQSPXPPGCWKIVWQGDSFDVSGADPDSQL
                     KHC"
ORIGIN      
        1 atggcacagg ctgaggtcct ggccagactc tagaaagaga ccagatgctc catctgtctg
       61 gatgacagga caaaaccagt caccatcaag tgcgaacaca acttctgtca gngctgcatc
      121 aaagactgct gggcaaagca tccagctatg ttctcctgtc ctgtctgcca acaccagtgc
      181 caacacagga ccctcagaag caatgcccag ctgnnctcca agaggagcaa aagcaagatg
      241 caggaaccca gcaccagttg cgagaagcat aaccagttct tcagcgtctt ctgtgaggat
      301 gacctgcagc tgctgcgtga ccagtgcgcc aagtctgaga gccacaggta ctatgaggtg
      361 acacccagta cagaggctgc ctctctctgc aggaaaaacc ttcagggcta catcaatatc
      421 ctgaagcggc aagtggaaga ggttcaagag ttaataagca ggcaaaatag aataacgctg
      481 gcccagaggg agcaagcaga agcgtagagg tcggaactaa cttctaagtt tgagcagctc
      541 ctccggtttc tgcattgtga agagcaggca gcattctccg ggttagagga ggaggaggag
      601 aagaaagaga agaaattgtt tggtaacata gcaccattag aatgctatgg ttccgtgctc
      661 agagacctcc tgagccaggt gatgctgact ggagggctct ccgaagctaa ggtgctgttc
      721 acggtcaagg atttttacct gaaggctatg agtcatcagc ccaaccattt tcccattcag
      781 ttaagagaag catacaactt ccctctccaa tattccgccc tatggaaggt tatacaacaa
      841 tttacagacc atgttactct agacccgaaa acggcccacc caaacctgct tatttctgag
      901 gctagaacat gtgtaacata cacaaaggaa aggcaatgtg tgcctggttt ttcaaggttt
      961 accaagagcc ccgtcatgtt ggggattcca cgttttaatt ctgggagaca tttctgggag
     1021 gtgcagggag gaaagaagct ggagtgggca gttggcatct gcaaagctga cttatccatc
     1081 ggggaaaggc agtcccctna tcctccagga tgctggaaga ttgtttggca gggggacagc
     1141 ttcgatgtct caggagctga tccagactct cagctgaagc attgttaa
//
