LOCUS       NM_001398767            4143 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 7 (Trim7), mRNA.
ACCESSION   NM_001398767 XM_008767722
VERSION     NM_001398767.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4143)
  AUTHORS   Reymond,A., Meroni,G., Fantozzi,A., Merla,G., Cairo,S., Luzi,L.,
            Riganelli,D., Zanaria,E., Messali,S., Cainarca,S., Guffanti,A.,
            Minucci,S., Pelicci,P.G. and Ballabio,A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J 20 (9), 2140-2151 (2001)
   PUBMED   11331580
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 22, 2021 this sequence version replaced XM_008767722.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.62289.1,
                                           SRR26643290.34547.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-550               JAXUCZ010000010.1  33706614-33707163
            551-646             JAXUCZ010000010.1  33707956-33708051
            647-877             JAXUCZ010000010.1  33713028-33713258
            878-900             JAXUCZ010000010.1  33715310-33715332
            901-1016            JAXUCZ010000010.1  33715813-33715928
            1017-1052           JAXUCZ010000010.1  33716369-33716404
            1053-4143           JAXUCZ010000010.1  33719519-33722609
FEATURES             Location/Qualifiers
     source          1..4143
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..4143
                     /gene="Trim7"
                     /note="tripartite motif-containing 7"
                     /db_xref="GeneID:303089"
                     /db_xref="RGD:1307328"
     exon            1..550
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..1564
                     /gene="Trim7"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif protein 7; tripartite
                     motif-containing protein 7"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM7"
                     /protein_id="NP_001385696.1"
                     /db_xref="GeneID:303089"
                     /db_xref="RGD:1307328"
                     /translation="MATVGPRTGPNSGAEALALAAELQGEATCSICLEFFREPVSVEC
                     GHSFCRACIMRCWERPGAGTGTVTRTLPCPLPCPQCREPARPSQLRPNRQLAAVASLL
                     RRFSLPPTVPGESGTPAVAAPAAAARCPQHGEQLKLYCQDDGRAICVVCDRAREHRSH
                     AVLPLEEAVQEAKELLDSRMKALKKVLEDYEAFRSTEERESKELLKQMAAEKEKVGAE
                     FQALRAFLVEQEGRLLSRLEVLSREVTQKQNENLAQLEGDITQLSKLSSQIQETAQKP
                     DIEFLQEFKNTLSKCSSVPSSKPTTVSSEMKNKVWNVSLKSFVLKGLLKKFKEDLQGE
                     LEKEEKVELSLDPDTANPRLILSLDLKSVRLGQRAQDLPNHPRRFDTNTRVLASCGFS
                     SGRHHWEVEVGSKDGWAFGVARESVRRKGLTPFTPEEGVWAMQLNNGQYWAVTSPERT
                     QLNCGQLSRVRVALDLEVGAVSFYAVEDMRHLYTFRVNFQERVFPLFSVCSTGTYLRI
                     WP"
     exon            551..646
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
     exon            647..877
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
     exon            878..900
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
     exon            901..1016
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1052
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..4143
                     /gene="Trim7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accacaaggc tcggaagtac caaggacacg gatggcgact gtggggccgc gaaccgggcc
       61 gaactcagga gcggaggctc tggcgctggc ggcagagctc caaggcgagg ccacctgctc
      121 catctgccta gagtttttcc gggaaccggt gtcggtcgag tgtggccaca gcttctgccg
      181 cgcctgcatc atgcgctgct gggagcgtcc gggagctggg accggcacgg tgacccgcac
      241 gctgccctgt ccactgccct gccctcagtg ccgcgagccc gctcgcccca gccagctgcg
      301 acccaatagg cagctggccg cggtggcctc actcctccgg cgcttcagcc taccccccac
      361 ggtccccggg gagagcggga ccccagcggt ggctgccccg gcggcggctg cgcgttgtcc
      421 gcagcacgga gagcaactta agctctactg ccaagacgac gggcgcgcca tttgtgtggt
      481 gtgcgaccgc gcccgcgagc accgttcgca cgccgtgctg ccgctggagg aggcagtgca
      541 ggaggccaag gagctgctgg attccaggat gaaggccttg aagaaagtac tggaagacta
      601 tgaagccttc aggtcaacag aggagaggga gagcaaggag cttctaaagc agatggcagc
      661 agagaaagag aaggtagggg cagagttcca agccctgcgg gccttcctgg tggagcagga
      721 gggtcgactt ctaagtcgac tggaagtact gtcccgggaa gtgacacaga agcagaatga
      781 gaacctggcc cagctggagg gtgacatcac tcagctgtcc aaactcagca gccagatcca
      841 ggagacagct cagaagccgg acatagaatt cctccaggag ttcaaaaaca cattaagcaa
      901 gtgcagcagt gtgcccagct ccaagccaac cacagtctca tccgagatga agaataaagt
      961 gtggaatgtt tccctcaaga gcttcgtttt aaaaggattg ctgaaaaagt tcaaagagga
     1021 tctccaggga gagctggaga aagaagagaa agtggaactc tctttggacc cggacacggc
     1081 caatccccgc ctcatcttgt ccttggatct aaagagcgta cgtctaggac agcgcgccca
     1141 ggacttgcct aaccatcctc gccgcttcga taccaacacc cgcgttttgg cgtcctgtgg
     1201 tttctcctca gggcgacatc actgggaggt ggaagtgggc tccaaggatg gctgggcttt
     1261 cggtgtggcc cgcgagagcg tgcgtcgcaa gggtctcaca ccctttaccc ccgaggaggg
     1321 cgtctgggct atgcaactca acaatgggca atactgggcg gtgaccagcc cagagaggac
     1381 gcagctcaac tgtgggcagc tgtcgcgggt gagggtggct ctggaccttg aggtgggagc
     1441 agtgtccttc tatgcagtgg aggacatgcg ccacctttac accttccgtg tcaacttcca
     1501 ggagcgagtg ttcccccttt tctctgtttg ttctactggc acctacttga gaatctggcc
     1561 ttgaagctct ctgtcgggct tcctaggagg ggacaggata gcggtgaact ctcccccgtg
     1621 agtctgaggt tctttatctt ggaccttcct tcacaccccc tacttcagct gcctaagaag
     1681 gcacagagca caacataggc tccgaaggct gactaagcaa agagacgcta tgggtaacta
     1741 attgcacagc gaagagatac cttggaccct tggcgcctgc tggccccttg taatgttcct
     1801 gcaaattgtg tctgaactat ggaagagggg tcgctccctg gcacaaaagc ccagctttaa
     1861 gcaaaggtgc ttcctaccac gagggcttac tgccttgttt cagaagggtc cctgtttaca
     1921 cagaacaatg tcaaagactg gtacccttgc acagggtgtg gtttggcctt gggcccatcg
     1981 cgtattactt tacatttgtg acaactgcag gctctgcctg gagaggtccc tgagtctccc
     2041 ggatccagct ggcctggctg ggttgtttat tcagggagca gcatcgtgat tccccaatta
     2101 gaagccagtc tagctggatc tgaacggaga ctcccgacaa gaggtcggaa ctacagtata
     2161 cacatatgag cacatcgctg ttccccggca ctctttgtgt gcatccttta caacactggc
     2221 tgccaacgtg cggtcacaga tgccttaagc ctcacatttt cctttgggta aggagatcag
     2281 aggttctgga actgtgaaat acaagttgat acttaggcgt ttacaggtgc agctagcacc
     2341 agggtggaga tggacgcagc acaagggcag tcttgacaaa ccctttctgg aactttctaa
     2401 gtctacgcaa acaccagaat atcctggtgg caaggattgc tgggcatctg ccctggaggg
     2461 agttgggcag gccagcctct ttagcggatt gactggctac tgttgcatag cgtacacaaa
     2521 gctgggccaa gaagggcggg agtgggcagt tccgggttca gtgctccact tggcagtgag
     2581 agaagagttg cagatataga gtgcgagcac atttctaggg atgtctggac tcattcttga
     2641 ctctgtggtt tgagtgcagg aggatatgcc tgagtattgg tttctgctag aatgatccca
     2701 agtgtcctgt atttgaggtg tgggagcctg tgtggtttgg ggggaaggtt atggagaggg
     2761 cgtttatgag gagctggatt ggggttaacc gatggaaaca tccacacaaa aacagtttcc
     2821 cccttcctct gaaatcatga ggaccagatt taggattcca gcacccatgt aacaggcatc
     2881 gtgccttgca aaatacccag gtctccagct tcaagggata tgacgtcctc ttttggtcgc
     2941 tgtatgcaca cctccgagcc cgtgtgcata catgtgtgta tacattcaca cagatcaacg
     3001 cgtttgtctt agttaaggtg ttattgctgt gaacagacac cgtgaccaat gcaagtttta
     3061 taaacattta attggggctg gcttacaggt tcagaggttc agtccattat catcaaggca
     3121 ggaggagcat ggcagcatcc aggaaggcat ggtgcaggag gagctgagtt ctacatcttc
     3181 accagaagga agctaggaac agactgagca tcctcaggca gctaggagaa gggtctccaa
     3241 gcccaccccc acagtgacag actgcctcca acaaggccac accttctaat agtgccactc
     3301 cctgggtcaa aaatgcaaac catcacaaca tttaataaag caaaacaaaa caaaaaacca
     3361 acaacaaaca aacccacagc tttcacttca aagggactaa gagatagttt attctggtgt
     3421 ggggaacgtg acagccagcc ttaacctgag gacactgtta ctgcctgctc tgtcctagtc
     3481 agttggtgac acttccccta gagtgctcag agctgtgtaa taatttacat acaattctcc
     3541 tcataatagc taaagaaact taatatggta ccaggtatct cttaagggcc actgaccttt
     3601 gccctggaat gccctgagat cttagtggcc tgctggtgag atcagagaaa gataatggtg
     3661 tccctgctct ctgcttttgt aaactccatc attgttatgt gactagagta agtgatcttt
     3721 tcattattat acacaggaaa aagaaacaac gggggtgggg ggtggggtgg gcaagctgga
     3781 gagatggctc agtggttaag agcactgact gctcttccat aggtcctgag ttcagttctc
     3841 agcaaccaca tggtggctca caaccatctg taatgagatc tagtgccctc ttctggtgtg
     3901 tctgaagaca gctgcagtgt actcatatac tttaaatcat taaataaata aaccttaaaa
     3961 aaaaaaaaag taaggggaga aaaccaattt tcctgcccag ctatgaattc cgtagataat
     4021 tttaatgggc acctttggca tctaccttta taaacgcttc tgttagctcc ctctggcaca
     4081 gcacactgtt tgtctctaaa gctgcctttg gctatcggtg agaataaact catttaatct
     4141 aaa
//
