LOCUS       XM_039111527            4887 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif-containing 62
            (Trim62), mRNA.
ACCESSION   XM_039111527
VERSION     XM_039111527.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427672.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4887
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4887
                     /gene="Trim62"
                     /note="tripartite motif-containing 62; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 9 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     107 samples with support for all annotated introns"
                     /db_xref="GeneID:313045"
                     /db_xref="RGD:1586169"
     CDS             1746..3173
                     /gene="Trim62"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM62"
                     /protein_id="XP_038967455.1"
                     /db_xref="GeneID:313045"
                     /db_xref="RGD:1586169"
                     /translation="MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEA
                     QGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILNARRAARPCQAHDKVKLF
                     CLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSAREHTEALQLL
                     KRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRY
                     SQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKTHETNLTYEDFPTSKYTG
                     PLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRF
                     DVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMH
                     DGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLC
                     SYFSPGQSHANGKNVQPLRINTVRI"
ORIGIN      
        1 ctccgtcatc ccctcttatc caccactgat tttcatagtg tctacttttt ttttgtaatc
       61 tgatggtctt atcctgacta acagtcatgc tccaaactga cctcttgcag gtactaagac
      121 agcaaccgcc tctctgggcc agcctttcct ccctcccaca agcctccgct ttgctcacct
      181 gtgcccagca ctgcgtgcaa agggtcccca tcctccactg cactggttat gtagtgagca
      241 tcctgcacgc caggaaaccg gaaccaaaac atttgtctgc ttgaaagccc aacgccttca
      301 agaaattctt ctctaagatg cccatgcctt caccttcccc aaacttcttc cttatcccac
      361 ctccaacggt acagagcggc ttgcagctcc ccatgtttct ccctttcatg cctctgttct
      421 ctctctctca cacacacaca ccttcttaga aatccctttc ttcttctcca tctggcacag
      481 attacaaggt ctaccattat acttttttct tactccacct ccttacacac acacacacac
      541 acacacacac acacacacac acacactcac tcacagatac gcagcaatgc agaaacattt
      601 gatgaatggc aagaaccctt gaggccaggc attagccagg gttctctcca caatcttcta
      661 ctaagaagct tttctcctta gaaagcgaag aggaaacaga acctgaaggt ttaggagtgc
      721 ggcttcgaat ttagcctaag ccaacagtag ggcacgtctc taattttatc actacaatcc
      781 aggcagacct tacattctat gcagactaca cagcatcgtc ttgtcttagt acatagctat
      841 tatttccctt agttcttcaa attgatcatc cagagagagg cttcttactt aggcgccgtc
      901 ctctcacttt ttctgcatta gctgtcctct cgccccctgc cgccaggacc ctaagcaacc
      961 ctgacagctg tgcagatcca gaagaaacag ctgtttttca cgtccctggg ggtcaggagc
     1021 acagcagcga cgaggcgggg tctggaggcc cctcccctcc ccccgcccgc cgcgggggcg
     1081 gagcggctcg ggtcccgccc gcgggggcgg agagggagcc ggggcgccgg gcagttcggc
     1141 tcggctggtt ccgggttgag aggctgtgct ggaccgaagc ggtggcctct gagctggtgc
     1201 gggtaagggg ccgcgcgggg ccgggatctg cggccagggt cgggcagctg agcgggccag
     1261 cacccctcct ctgctctgcc gggcaaagcc gcggtgcggc tcggtctggc tgctctgtcc
     1321 cgcagaaatc cccatcccca gctcgacccc ctcccaaagc tgtccgggtc ccgggattcc
     1381 agccccacag tggcctccgc ccctcttcgg gatctcctcc tcgcagcatc tatcccttgg
     1441 gactgtctgg tcctctagat cctcctcgcc tggagcccct tccttgggac gccctcggcc
     1501 tctctcctcc agcgctcatc gctggtggcc acctaggacc tcgaaaccga gctccggtgc
     1561 tcgcatcccg ggtggcaccc actcggcacc gaaccctcgc gcctccggcg tctcagatag
     1621 ctcccctcgc gctccccggt gcctgtcgcc cgtgcccccg tgggcctggc ccccgggtac
     1681 cgcccccaat cgcgccgcgc cggccgccgg cctcccgggc tccgctccgc accgcccccg
     1741 gcgccatggc gtgcagcctc aaggacgagc tgctgtgctc catctgcctg agcatctacc
     1801 aggacccggt gagcctgggc tgcgagcact acttctgccg ccgctgcatc accgagcact
     1861 gggtgcggca ggaggctcag ggcgcccgcg attgcccgga gtgccggcgc acgttcgccg
     1921 agcccgcgct cgcgcccagc ctcaagctgg ccaacatcgt ggagcgctac agcgccttcc
     1981 cgctggacgc catcctcaac gcgcgccgag ccgcgcgacc ctgccaggct cacgacaagg
     2041 tcaagctctt ctgcctcacg gaccgcgcgc tcctctgctt cttctgtgac gagcccgcgc
     2101 tgcacgagca acaccaggtc actggcatcg acgacgcctt cgaggagctg cagagagaac
     2161 tgaaggagca gcttcaggcc cttcaggaca gcgcgcggga gcacacagag gcgctgcagc
     2221 tactcaagcg acagctggca gaaaccaagt cttctaccaa gagcctgcgg accaccattg
     2281 gggaggcctt tgagcggctg caccggctac tgcgagagcg gcagaaggcc atgctggagg
     2341 agctggaggc tgacaccgcc cgcacgctga ccgatattga acagaaggtc cagcgttaca
     2401 gccagcaact gcgaaaggtg caagaggggg cccagatcct gcaggagcgg ctggctgaga
     2461 ccgaccggca caccttcctt gctggagtgg cctccctgtc tgagaggctc aaagggaaga
     2521 ctcatgagac caacctaacg tacgaagact tcccgacctc caagtacacg ggccccctgc
     2581 agtacaccat ctggaaatct cttttccagg acatccaccc agtaccggct gccctgaccc
     2641 tggacccagg cactgcccac cagcgcctga tcctgtctga cgactgcacc atcgtggcct
     2701 atgggaacct acacccacaa ccacttcagg actcaccgaa gcgctttgat gtggaggtgt
     2761 cagtgctggg ctctgaggcc ttcagtagtg gtgtccacta ctgggaagtg gtggtggcag
     2821 agaagaccca gtgggtgatt gggctagccc acgaggctgc cagtcgcaag ggcagcatcc
     2881 agatccagcc cagccgtggc ttctactgca ttgttatgca cgacggcaac cagtacagcg
     2941 cgtgcacaga gccctggacg aggctcaacg tccgtgacaa gcttgacaag gtgggtgtct
     3001 tcctggacta tgaccagggc ctcctcatct tctacaatgc cgatgacatg tcctggctct
     3061 ataccttccg agagaagttc cctggcaagc tctgctccta cttcagcccc ggccagagcc
     3121 atgccaacgg caagaacgtc cagccactgc ggatcaacac ggtccgcatc taatcggggc
     3181 agaggaagac cgaagcctcc tggggctgtg accaccagca agagccttgc ctgacagatg
     3241 gagagtctgc actacgcagg cccactgtgg ccaccctgag acctcaggcc agttgtttaa
     3301 cgcccccagc ctcctcttcc ccatctgtga gctggagatt gtgctctgtg gttgatatcc
     3361 tgtagctctg atcctaatgg gatatgacat ggcttctccc cagggcagcc cttgccgaac
     3421 ccctcatccc cattcctcca gggaaaggga atctcccctt gtctccctgc cccccccccc
     3481 acctaaccga gcatcgtgac agatcagatg tgatcagtcg cttgcggccc ataagatata
     3541 cagaatcctc ttatgctcat ggaagaattg actcaccctt gaccaggaga attatgggcc
     3601 actttactct tgatccaagt ccacaaggga cccagggaga cgctggttct aggattattt
     3661 gagggtcacc ctctcctgtc acccgtgctc caagccgaga gctgtgggtt tcctcctctc
     3721 tcactaatct gcaagtcaca caagacaggc agcccacacc atgccaccac cttctagccc
     3781 atggattctg gggcagggtg aggtataagg aacctagaag ccaatacaga ataccatcag
     3841 gacagagcac caatggatga tccaagtccc caacagctcc tgaggacaga ggtcctgcca
     3901 atcctcatca gccaggcctc tgacctgctg cagggacaga gggtgctagc agcagttctt
     3961 tctgtcagga cctgaaccgc aggaggactg ttagtgggca ccaccttgga cttgacatct
     4021 ggctccctta ggatcctgat gcacaaacga gacccacttt agttgacttc atcggacaag
     4081 aatttgcaat cggctccccg gtggcttgca agatcactga aagggctgga aggggagaac
     4141 caactcccag cagctagagg gattgtgtct tgtggccagg agtgtcgctt ccgtttgcag
     4201 ctgccccaca agctgctgcc tgccaccatc catgccagca agtggttgtc cgagcctgcc
     4261 ccaccccctc tcaactcagg tcccagttct acatctttca gagggattct tttcgtggac
     4321 acttgagtct gaacccagac tcagactgca aagcagcttg ggaaatgtag tctttctctt
     4381 ccagcctcag ccatagacaa aacttagcat ggtggtggaa caggcccatc tacaatttcc
     4441 ttgccaatga atccaactgt gaagaactca ggagaatcca tgaatccacc tcaaggcctt
     4501 ggctttgaag cagaaccact aaaaatgtcc tgctccatgg ctcttgtccc tgcctgtccc
     4561 agcccagagg caacaaccta aggagtgggt agcaccagaa atatagacaa aatggctccc
     4621 cagcctcagc cttcctttgt agtcccggga cctcaattct gcacttggga ttcagtgagc
     4681 atgcccatcc tcagggagcc tgaatggatg aactcgagtg gctcccactt aacctgccat
     4741 gcgctaggct tccctgagca agaggaaccc tgagccctgc tcgccctcac tcccagatgc
     4801 caggccatgc ctggcagtat ttttatttaa aacatggccc cttttgtgca ttctggtcag
     4861 tttgtattaa attaaaatca cagggca
//
