LOCUS       XM_008771198            1422 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif containing 60
            (Trim60), mRNA.
ACCESSION   XM_008771198
VERSION     XM_008771198.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008771198.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008771198.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 6 indels
            internal stop codons :: corrected 4 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-249               JACYVU010000279.1  4626935-4627183
            250-250             "N"                1-1
            251-462             JACYVU010000279.1  4627184-4627395
            463-531             JACYVU010000279.1  4627397-4627465
            532-533             "NN"               1-2
            534-780             JACYVU010000279.1  4627466-4627712
            781-1161            JACYVU010000279.1  4627714-4628094
            1162-1162           "N"                1-1
            1163-1209           JACYVU010000279.1  4628095-4628141
            1210-1210           "N"                1-1
            1211-1422           JACYVU010000279.1  4628142-4628353
FEATURES             Location/Qualifiers
     source          1..1422
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1422
                     /gene="Trim60"
                     /note="tripartite motif containing 60; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 5 bases in 4 codons; deleted 2 bases in 2 codons;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 10% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100362694"
                     /db_xref="RGD:2324264"
     CDS             1..1422
                     /gene="Trim60"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 5 bases in 4 codons;
                     deleted 2 bases in 2 codons; substituted 4 bases at 4
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:124..126,aa:OTHER)
                     /transl_except=(pos:793..795,aa:OTHER)
                     /transl_except=(pos:865..867,aa:OTHER)
                     /transl_except=(pos:1036..1038,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: tripartite motif-containing
                     protein 60"
                     /protein_id="XP_008769420.1"
                     /db_xref="GeneID:100362694"
                     /db_xref="RGD:2324264"
                     /translation="MDFRTLENLQDKCDCSICLDFLEDPGTTRCGHNRRACLSLFXSD
                     LKHIFPCSVCQAGFPQRSLSRKHQHGHVMEIVSLLQKRQXKRQEEHTMCQKHDQPLVQ
                     LCVKDLDILCTQCSLSVEHQGHYTCPIKKAGSYHRRILEGAIETLKCKVKGVKEEEDL
                     ALGCRRVLEVREETEYKXEISCEFGPINLFLKNEYEVNVNEIHIEELVGLSELNEYLN
                     NLSDHVSTAKDLLKEAEAIHEGSDVTLLTSTLRAYHRLQNLRTPKLXSFRSKHYGLSL
                     PPQYSGLDRIIKXFQTGMTCGLDIAHPQLVTSEDRKSVLYKEARQHVCAGPRKFHLWA
                     ALLGCEGFHSGXLYWGVKVGDKPRWALGVCQACFSGDLSNQPLVAEGLWAIGRXTEST
                     YVTCGPSRTEFXPVVRPSKIGSFLDYELGELSFYNMNDRSLLYTFGNSLTSTLWPYFS
                     TGTDSESLEILTHPTPDTGSYLG"
ORIGIN      
        1 atggacttca gaactctaga aaacttgcag gacaagtgtg actgttccat ttgcctggat
       61 ttcttagaag acccagggac cactagatgt gggcacaacc gtcgtgcctg cctcagtttg
      121 ttctagagtg atctgaaaca catcttcccc tgctctgtct gccaagctgg cttcccacag
      181 agaagcttga gcagaaagca ccagcatggt cacgtgatgg aaatcgttag cctcttgcag
      241 aagagacagn gcaagaggca ggaagagcac acgatgtgtc agaagcatga tcagcctctg
      301 gtccagctct gcgtgaagga tctagatatt ttatgtaccc agtgtagcct ctctgttgaa
      361 caccagggcc attacacctg ccccattaag aaagctggct cttaccacag aagaattcta
      421 gagggggcca ttgaaacttt gaagtgcaag gtgaaaggag tcaaagaaga agaagaccta
      481 gctctggggt gcagaagagt tcttgaagtg agggaggaga cagaatataa annagaaata
      541 agttgtgaat ttgggccaat caatctgttc ctgaaaaatg agtatgaagt gaatgtaaat
      601 gagatacaca ttgaggagct tgtgggttta tcagaactga atgaatatct caacaatctg
      661 tcagaccacg tttccacagc aaaagatctg ttgaaggaag cagaggccat acatgaaggg
      721 tcagatgtca cactcctgac aagcactctg agagcctacc acaggctgca aaaccttaga
      781 acccccaaac tgtagtcatt caggtcaaag cactatggcc tcagcctccc gccacagtat
      841 tctggcttgg acagaatcat taagtgattt caaacaggta tgacttgtgg tcttgacata
      901 gcacaccctc agctcgttac ttctgaggat agaaagtctg tgctttataa agaagcaagg
      961 caacatgtgt gtgctggccc tcggaaattt cacctctggg ctgctctcct ggggtgtgaa
     1021 ggattccatt cgggttgact gtactgggga gtaaaagtgg gagacaagcc caggtgggca
     1081 ctgggtgtgt gtcaagcctg cttttctggg gacttgagca atcagccttt ggttgccgag
     1141 ggcctctggg caattgggag gntaactgag agtacctatg tcacctgtgg gccttcaaga
     1201 actgaattcn tgccagtggt gcggcccagc aagattggca gctttttgga ttatgaattg
     1261 ggtgagctct ccttctacaa tatgaatgac agatctcttc tctacacttt cgggaattct
     1321 ttaaccagca ctctttggcc ttatttctct acaggaacag attctgaatc tctcgaaatc
     1381 ttaacccacc ccacaccaga cacagggtct tacttaggat aa
//
