LOCUS       NM_001399685            2410 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus tripartite motif containing 56 (Trim56), mRNA.
ACCESSION   NM_001399685 XM_039090065
VERSION     NM_001399685.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Jan 12, 2022 this sequence version replaced XM_039090065.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.49974.1,
                                           SRR26643292.47457.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000012.1  25193308-25193382
            76-204              JAXUCZ010000012.1  25194759-25194887
            205-2410            JAXUCZ010000012.1  25195025-25197230
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q12"
     gene            1..2410
                     /gene="Trim56"
                     /note="tripartite motif containing 56"
                     /db_xref="GeneID:120095910"
                     /db_xref="RGD:40958426"
     exon            1..75
                     /gene="Trim56"
                     /inference="alignment:Splign:2.1.0"
     exon            76..204
                     /gene="Trim56"
                     /inference="alignment:Splign:2.1.0"
     exon            205..2410
                     /gene="Trim56"
                     /inference="alignment:Splign:2.1.0"
     CDS             206..2410
                     /gene="Trim56"
                     /EC_number="2.3.2.27"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM56"
                     /protein_id="NP_001386614.1"
                     /db_xref="GeneID:120095910"
                     /db_xref="RGD:40958426"
                     /translation="MTSKVSSPTLLEALSSDFLACKICLEQLHTPKTLPCLHTYCQDC
                     LAQLDIGGQVRCPECRETVPVPPEGVAAFKTNFFVNGLLDLVKARAAGDSHSGKPTCA
                     LCPLVGGKSSGGPATARCLDCADDLCQACADGHRCSRQTHKHRVVDLVGYRAGWYDEE
                     ARERQASQCPQHPGETLCFLCQPCSQLLCKDCRLGPHIDHPCLPLAEAVRSRKPGLEE
                     LLAGVDSNLLELEATRVAEKEALALLREQAASVGTQVEEAAERILKSLLAQKQEVLGQ
                     LRALVEAAEEATRERLTKIESQEQVAKAAAAFARRVLSLGLEAEILSLEGAITQRLRQ
                     LQDTPWTSGPTRCVLPQLELHPGLEDKNCHLLRLSFEEPRQSQKDGGKVGAGTQGGDE
                     AQSQGDDRTKTGKQGGAQPLIPKEGKAQNPPEDDEVLIERGNRPNKKKKCKGRGKSVS
                     REPSPILRPNLEGSGPLPRPVFSWSFPTRMPGDKRSPRITGLCPYGPQEILVADEQNR
                     VLKRFSLNGDYKGTVPVPEGCSPCSVAALQNAVAFSANAKLYLVSPEGEVQWRRSLSL
                     AQSSHAVAAMPCGDRVAVSVAGHVEVYKKEGSLATRFIPGGKASRGQRALVFLTTSPQ
                     GNFVGSDWQQNSVVFCDGLGQVIWEYKGPGLHGCQPGSVSVDKKGYIFLTLREVNKVV
                     ILDPKGSLLGDFLTAYHGLEKPRVTTMVDGKYLVVSLSNGTIHVFRVRFPDS"
ORIGIN      
        1 tgccggaggc agcggcagcg ggttttcggg gctccccggg tcccgctggg agaatccaag
       61 atctgctgtg tctgggctca gcacttccta ccgtgttcgc gtgtttatga tccgtgagtg
      121 aaggagacag actggaagaa agaaggcctt cccttagtac ccagtgcctc tcacaacgca
      181 agccagaact taccagacat ccagtatgac ctccaaagtc tcttccccaa ccctgctgga
      241 ggcactgagc agcgatttcc tagcctgtaa aatctgcctg gagcagttac acacgcccaa
      301 gactctgcca tgtctacata cctactgcca ggactgtctg gcccaactgg acatcggtgg
      361 ccaggtccgc tgccccgagt gtcgggagac tgtgcctgtc cccccggaag gtgtggccgc
      421 cttcaagacc aacttctttg tcaatgggct cttggatctt gtcaaggcca gagctgccgg
      481 ggacagccat tcagggaagc caacctgcgc tctgtgccct ctggtggggg gcaagagctc
      541 ggggggaccc gcgacagcca ggtgcctgga ctgcgcagat gacttatgcc aggcctgtgc
      601 tgacgggcac cgctgctccc gacagaccca caagcaccgt gtagtcgacc tggtgggtta
      661 tcgagccggg tggtacgatg aagaagctcg agagcgccag gcatcccagt gtccccagca
      721 ccccggggaa accctctgct tcctgtgtca gccttgttct cagttgctct gcaaggactg
      781 ccgcctgggt ccccatattg atcacccctg cctgcccctg gcggaagcag tgcgttccag
      841 gaagccaggc cttgaggagt tattggcggg tgtggacagt aatctgctgg agctagaagc
      901 cactcgggtg gcagaaaagg aagcactggc cttgctccga gagcaggcag ccagtgtggg
      961 gactcaggtg gaggaggcgg ccgaacgaat cctcaaatcc ctgctggccc agaagcagga
     1021 ggtgttggga caactccggg ccctcgtgga ggctgctgag gaggctacga gggagaggct
     1081 gaccaagata gagagccagg agcaggtggc caaggcggct gctgcctttg cccgtcgggt
     1141 gctcagcctg ggtctggagg cggagatcct ttcgctggag ggagcgatca cacagcgcct
     1201 gcgccagctt caagacactc cctggacatc tgggcccacc cgctgcgtgc tgccccagct
     1261 ggagctccac cctgggctcg aggacaagaa ctgccacttg ctccgactct cctttgagga
     1321 gccaaggcaa tcccagaagg acggtgggaa ggttggagct ggcacccaag gtggagatga
     1381 agctcaaagc caaggggatg acagaactaa gacagggaag cagggcggag cccagcccct
     1441 gattcccaag gaaggcaaag cccagaaccc cccagaagat gacgaggtcc taatcgaaag
     1501 gggtaacaga cctaacaaga agaaaaagtg caaaggcagg ggcaagtctg tctctcggga
     1561 gcccagcccc atcctgaggc caaacctgga aggttcgggc cccctccctc ggcctgtgtt
     1621 ctcctggagt ttccccacaa ggatgcctgg ggacaagcgc tccccacgaa tcactgggct
     1681 ctgtccctac ggcccccagg agatcttggt ggccgatgag cagaacaggg tcttgaaacg
     1741 cttctccctc aatggcgact acaagggcac agtgccggtc cccgagggct gttccccgtg
     1801 cagcgtggct gccctgcaga acgccgtggc tttctcggcc aacgcaaagc tctatctcgt
     1861 cagtcctgag ggggaagttc agtggcgcag gtccctgagc ctcgcccagt ccagccacgc
     1921 cgtggccgcg atgccgtgtg gagaccgggt ggctgtcagt gtggcaggcc acgtggaggt
     1981 atacaagaaa gaaggcagcc tggctacccg gtttatccct ggaggcaagg ctagccgagg
     2041 ccagagggca ctggtgttcc tgaccaccag cccccagggc aatttcgtag ggtcagattg
     2101 gcagcagaac agtgtggttt tctgtgatgg gctaggtcag gtgatctggg aatacaaagg
     2161 ccctgggctc catggctgcc agccaggttc tgtgtctgtg gataagaagg gctacatatt
     2221 tctgaccctt cgagaggtga ataaggtggt gatcctggat cccaaggggt cacttctggg
     2281 tgacttccta acagcatacc acggcctgga aaagccccgg gtaaccacca tggtagatgg
     2341 caaatacttg gtggtgtcac ttagtaatgg aaccatccat gtctttaggg tcaggtttcc
     2401 tgacagttaa
//
