LOCUS       NM_001013217            1450 bp    mRNA    linear   ROD 01-JUN-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 54 (Trim54), mRNA.
ACCESSION   NM_001013217 XM_343026
VERSION     NM_001013217.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1450)
  AUTHORS   Chen,H., Chen,X., Yang,L., Sheng,S., Yang,J., Lu,Y., Sun,Y.,
            Zhang,X. and Jiang,C.
  TITLE     TRIM54 alleviates inflammation and apoptosis by stabilizing YOD1 in
            rat tendon-derived stem cells
  JOURNAL   J Biol Chem 300 (1), 105510 (2024)
   PUBMED   38042492
  REMARK    GeneRIF: TRIM54 alleviates inflammation and apoptosis by
            stabilizing YOD1 in rat tendon-derived stem cells.
REFERENCE   2  (bases 1 to 1450)
  AUTHORS   Spencer,J.A., Eliazer,S., Ilaria,R.L. Jr., Richardson,J.A. and
            Olson,E.N.
  TITLE     Regulation of microtubule dynamics and myogenic differentiation by
            MURF, a striated muscle RING-finger protein
  JOURNAL   J Cell Biol 150 (4), 771-784 (2000)
   PUBMED   10953002
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083706.1.
            
            On Apr 20, 2005 this sequence version replaced XM_343026.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083706.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06621351, SAMN11044071
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1450
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..1450
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /note="tripartite motif-containing 54"
                     /db_xref="GeneID:362708"
                     /db_xref="RGD:1306453"
     exon            1..352
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     CDS             185..1279
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /note="ring finger protein 30"
                     /codon_start=1
                     /product="tripartite motif-containing protein 54"
                     /protein_id="NP_001013235.1"
                     /db_xref="GeneID:362708"
                     /db_xref="RGD:1306453"
                     /translation="MNFTVGFKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQH
                     NLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVE
                     NIIDIYKQESSRPLHSKAEQHLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEV
                     APLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQKFE
                     TLCAVLEERKGELLQALARVQEEKLQRVRSLIRQYGDHLEASSKLVESAIQSMEEPQM
                     ALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFSVIVEHVAEMLRTIDFQPGASG
                     DEEDDEVTLDGEEGNTGLEEERLDGPEGLH"
     exon            353..525
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            526..697
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            698..793
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            794..1027
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1050
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1175
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1268
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
     exon            1269..1411
                     /gene="Trim54"
                     /gene_synonym="Rnf30"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaaatagcc cagggagaga ggagctgtta gaggaaggga caggaagcac cgctctttcc
       61 agagggagca atatcaggga tcccaagaat ctacagtcag cctaaactga cagcggaagg
      121 gcgcgcaggc agggggagag aaggccagca acagggccac agcaaggcac cagagcaccg
      181 cgggatgaac ttcacggtgg gtttcaagcc gctgctgggg gatgcacaca acatggacaa
      241 cctggagaag cagctcatct gccccatctg cctggagatg ttctccaagc ccgtggtgat
      301 cttgccgtgc caacacaacc tgtgccgcaa gtgtgccaac gacgtcttcc aggcctctaa
      361 ccctctgtgg caatcccggg gctccacaac tgtgtcttca ggaggacgtt tccgctgccc
      421 atcttgtagg cacgaggttg tcctggaccg gcatggcgtc tacggcctgc agcggaacct
      481 gctagtggag aatattattg acatctacaa acaggagtcc tcccggccac tgcactccaa
      541 ggctgaacag caccttatgt gtgaggaaca tgaagacgag aagattaaca tctactgtct
      601 gagctgtgag gtgcccacct gctctctctg caaggtcttt ggcgcccaca aggactgtga
      661 ggtggcccct ctgcccacca tttacaaacg ccagaagagt gagctgagtg acggcatcgc
      721 gatgctggtg gcaggcaacg accgtgtgca ggcagtgatc acgcagatgg aggaggtgtg
      781 ccagaccatt gaggacaaca gccgcagaca gaaacaactg ttaaaccaga agttcgagac
      841 cctgtgcgcg gttttggagg agcgcaaggg cgagttgctt caagcgctgg ctcgggtgca
      901 agaggagaag ctgcagcgcg tgcgtagcct catccgccag tacggagacc acttggaggc
      961 ctcctctaag ctggtggagt ccgccatcca gtccatggag gagccgcaga tggctctcta
     1021 cctccagcag gccaaggagc tgatcaacaa ggtcggggca atgtcgaagg tggagctggc
     1081 tggacggccg gagccaggct atgagagcat ggagcaattc tctgtgatcg tggagcacgt
     1141 ggcggaaatg ttgcggacca tcgacttcca gccgggcgcc tctggggatg aagaggatga
     1201 cgaggtgact ttggacgggg aagagggcaa cacagggctg gaggaggagc ggctggacgg
     1261 gccagaaggt ttgcactgat ccgactctga tccagagcgc acgcccggga gccaagggat
     1321 gctgaggatc tgcgcagaga ccatcgcgct acccatctcg gcctccaccc ccagggatgg
     1381 ttctcaataa agaactcatg tgtcccacgt caaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1441 aaaaaaaaaa
//
