LOCUS       NM_001109585            2198 bp    mRNA    linear   ROD 26-APR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 47 (Trim47), mRNA.
ACCESSION   NM_001109585 XM_221124
VERSION     NM_001109585.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2198)
  AUTHORS   Sharma,G. and Banerjee,S.
  TITLE     Activity-regulated E3 ubiquitin ligase TRIM47 modulates excitatory
            synapse development
  JOURNAL   Front Mol Neurosci 15, 943980 (2022)
   PUBMED   36211980
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2198)
  AUTHORS   Hao,M.Q., Xie,L.J., Leng,W. and Xue,R.W.
  TITLE     Trim47 is a critical regulator of cerebral ischemia-reperfusion
            injury through regulating apoptosis and inflammation
  JOURNAL   Biochem Biophys Res Commun 515 (4), 651-657 (2019)
   PUBMED   31178138
  REMARK    GeneRIF: Trim47 has a role in regulating cerebral
            ischemia-reperfusion injury through regulating apoptosis and
            inflammation
REFERENCE   3  (bases 1 to 2198)
  AUTHORS   Ji,Y.X., Huang,Z., Yang,X., Wang,X., Zhao,L.P., Wang,P.X.,
            Zhang,X.J., Alves-Bezerra,M., Cai,L., Zhang,P., Lu,Y.X., Bai,L.,
            Gao,M.M., Zhao,H., Tian,S., Wang,Y., Huang,Z.X., Zhu,X.Y.,
            Zhang,Y., Gong,J., She,Z.G., Li,F., Cohen,D.E. and Li,H.
  TITLE     The deubiquitinating enzyme cylindromatosis mitigates nonalcoholic
            steatohepatitis
  JOURNAL   Nat Med 24 (2), 213-223 (2018)
   PUBMED   29291351
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On Oct 4, 2007 this sequence version replaced XM_221124.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2198
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..2198
                     /gene="Trim47"
                     /note="tripartite motif-containing 47"
                     /db_xref="GeneID:690374"
                     /db_xref="RGD:1597317"
     exon            1..705
                     /gene="Trim47"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..1947
                     /gene="Trim47"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif protein 47; tripartite
                     motif-containing protein 47"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM47"
                     /protein_id="NP_001103055.1"
                     /db_xref="GeneID:690374"
                     /db_xref="RGD:1597317"
                     /translation="MDGSGPFSCPICLEPLREPVTLPCGHNFCLACLGALWPHRSAGG
                     TGGSGGPARCPLCQEPFPDGLQLRKNHTLSELLQLRQGSSPGPMSAPAPGSARGATPE
                     PSAPSAPPPAPEPSAPCAPEPWPAGEEPVRCDACPEGAALPAALSCLSCLASFCSAHL
                     APHERSPALRGHRLVPPLRRLEESLCPRHLRPLERYCRVERVCLCEACATQEHRGHEL
                     VPLEQERALQEVEQSKVLSAVEDRMDELGAGIAQSRRTVALIKSAAVAERERVSQMFA
                     EATASLQSFQTEVLGFIEEGEAAMLGRSQGDLRRQEEQRSRLSRARHNLSQVPEADSV
                     SFLQELLALRLALEEGCGPGPGPPRELSFTKSSQAVRAVRDILVSACASQWEQLRGLG
                     SGEDELQKLGSEADVESQDPDSTNLLESEAPRDYFLKFAYIVDLDSDTADKFLQLFGT
                     KGVKRVLCPINYPESPTRFTHCEQVLGEGALDRGTYYWEVEIIEGWVSVGVMAEGFSP
                     QEPYDRGRLGRNAHSCCLQWNGRGYSVWFCGLEAPLPHAFSPTVGVCLEYADHALAFY
                     AVREGKLSLLRRLKASRPRRSGALASPTDPFQSRLDSHFSGLFNYRLKPAFFLESVDA
                     HLQIGPLKKSCISVLKRR"
     exon            706..801
                     /gene="Trim47"
                     /inference="alignment:Splign:2.1.0"
     exon            802..1032
                     /gene="Trim47"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1231
                     /gene="Trim47"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1306
                     /gene="Trim47"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..2198
                     /gene="Trim47"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgggtagcg gcggagccat ggacggcagc gggcctttca gctgccccat ctgcctggaa
       61 ccgctccggg agccggtgac actaccctgc ggccacaact tctgtctcgc ttgcctgggc
      121 gcgctctggc cgcaccggag cgcgggcggc accggtggtt ccggaggtcc ggctcgctgc
      181 ccactttgcc aggagccttt tcccgacggc ctgcagctcc gcaagaacca cacgctgtcc
      241 gagttgctgc agctccgcca gggctcgagc cccggaccca tgtccgcccc ggctccaggc
      301 tcggcccggg gcgcgacgcc cgagccctcc gcacccagcg caccacctcc ggctccggag
      361 ccctccgctc cctgcgcgcc cgagccgtgg cccgcgggtg aggagccggt gcgctgcgac
      421 gcgtgccccg agggcgccgc cctgcccgcc gcgctctcct gcctctcctg cctcgcctcc
      481 ttctgctccg cgcacctggc cccgcacgaa cgcagccccg ccctgcgcgg ccaccgcctg
      541 gtgcccccgc tgcgccggct ggaggagagc ctgtgcccgc gccacctgcg gccgctggag
      601 cgctactgcc gcgtggagcg tgtgtgcctt tgcgaggcct gcgccactca ggagcatcgg
      661 ggccacgagc tcgtgccgct ggagcaggag cgcgcgcttc aggaggttga acagtccaaa
      721 gtcctgagcg ctgtggagga ccgcatggat gagctgggtg ccggcattgc acaatcccgc
      781 cgtactgtgg ccctcatcaa gagtgcagct gtggcagagc gggagagggt gagccagatg
      841 tttgccgagg ccacagcctc cctacagagt ttccagactg aggtgctggg gttcatcgag
      901 gagggggagg ccgccatgtt gggccgctct caaggtgacc tgcgcagaca agaggaacag
      961 cgcagccgcc taagccgggc tcgccacaac ctcagtcagg ttccagaggc ggattcagtc
     1021 agctttctcc aggagctcct ggcactgcgg ctggccctgg aggaggggtg tggccctggg
     1081 cctggacccc ccagggaact cagcttcacc aagtcctccc aagcggtccg agccgtgagg
     1141 gacatccttg tctcagcctg tgccagccag tgggagcagc tgcgggggct gggcagtggt
     1201 gaggatgagc tacagaaact tggctcagaa gctgatgtgg agtcccagga ccctgacagc
     1261 accaacctgc tggagagcga ggctcccagg gattatttcc tcaagtttgc ttacattgtg
     1321 gacttggaca gcgacaccgc ggacaagttc ctgcagcttt ttggaactaa aggtgtcaag
     1381 agagtactgt gtcccatcaa ctacccggag tcacccaccc gattcacaca ctgcgaacag
     1441 gtgctaggag aaggtgccct ggaccggggc acctactact gggaggtgga gatcatcgaa
     1501 ggatgggtca gtgtgggtgt catggccgag ggcttctccc cgcaagagcc ctatgaccgg
     1561 ggccggctgg gccgaaacgc acactcatgc tgtctgcagt ggaatgggcg tgggtactca
     1621 gtctggttct gcgggctgga agccccacta ccccatgcct tttcgcctac ggttggggtc
     1681 tgcctggagt acgctgacca tgccctggcc ttctacgctg ttcgagaggg gaagctgagc
     1741 cttcttcgga ggctcaaagc ctcccggcct cgccgcagcg gtgccctggc ctcccccact
     1801 gaccctttcc agagtcgcct ggacagccat ttttcagggc tcttcaacta caggctcaag
     1861 cctgccttct tcctggagag tgtggatgcc cacctgcaga ttggacccct caagaaatcg
     1921 tgcatatctg tgctaaagag gaggtgatac atggctgttt catcccgtgg cggctcggct
     1981 gggagaaggc gctagtctca gagacccccc acattcctag ctgccttctc aaggccttcc
     2041 actttgcagg gcagaggtcc ccagccctgc ctcttgcagg acttgttttg aaaatagaac
     2101 ttcagctggg agacaattcc agtctgcccc agccccttct ttcccaggtc tctagaacta
     2161 cctggcacac agtaggtgct caataaacat ttgttgaa
//
