LOCUS       NM_001142944            1356 bp    mRNA    linear   ROD 21-MAY-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 43A (Trim43a), mRNA.
ACCESSION   NM_001142944 XM_001066018 XM_236463
VERSION     NM_001142944.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000008.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.829612.1,
                                           SRR26360181.1583777.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-408               JAXUCZ010000008.1  98442456-98442863
            409-504             JAXUCZ010000008.1  98443763-98443858
            505-735             JAXUCZ010000008.1  98444413-98444643
            736-758             JAXUCZ010000008.1  98445738-98445760
            759-856             JAXUCZ010000008.1  98446431-98446528
            857-1356            JAXUCZ010000008.1  98448105-98448604
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..1356
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /note="tripartite motif-containing 43A"
                     /db_xref="GeneID:300884"
                     /db_xref="RGD:1561074"
     CDS             1..1356
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /codon_start=1
                     /product="tripartite motif-containing 43-like"
                     /protein_id="NP_001136416.1"
                     /db_xref="GeneID:300884"
                     /db_xref="RGD:1561074"
                     /translation="MESDNLQASQEILTCFICLGIFTDLVLTRCGHPFCRACLLLFSA
                     DTQIPIHCPLCRHPSKPNFRTAIPGKKLISIVRKERIKKYLSSEEHKCMTHKERKTIF
                     CDENRVLLCQLCSKSQEHRGHRHCHIEEAVLKQMEKLLKQMESLLKKIQELQENLEAE
                     KTMTDQWMDYVTLREEMIRTEYRKLYPSLDEEEAQHIECMKNQGNTNLEELRKSEAMM
                     VHKRSQLMKVYQELMTMSQKPYEVLQQGLDDLFRRCELVQLGMPQVMKPELSAHPNAG
                     LTARFSFFKVKIFFQNLIILNCKMSQFFDIRRFTSRPCHQNTSLDSAGSYRASWGAMD
                     FTTGKHYWELDLKDCEHWAVGVCSNVWLSRSHKKIGSSGAFLLVCVKEGNHYSLFTTC
                     PVSHHYIEKPTGRVGVFLDCEGGCMSFLDVAKSSLIHSYHPEAFSLRVRPFFSTVYTR
                     S"
     exon            1..408
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /inference="alignment:Splign:2.1.0"
     exon            409..504
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /inference="alignment:Splign:2.1.0"
     exon            505..735
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /inference="alignment:Splign:2.1.0"
     exon            736..758
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /inference="alignment:Splign:2.1.0"
     exon            759..856
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /inference="alignment:Splign:2.1.0"
     exon            857..1356
                     /gene="Trim43a"
                     /gene_synonym="RGD1561074"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggagtcag ataatttaca agcctcccag gaaatactta cctgcttcat ctgcctgggc
       61 atctttacgg acctagtcct gacaaggtgt ggccacccct tctgcagggc ctgtctcctc
      121 cttttttcag cagacaccca aatccctatc cactgcccgc tgtgtaggca tccatccaaa
      181 ccgaatttca gaactgctat tcctgggaag aagctgatat ctattgtcag gaaagaaagg
      241 atcaagaagt atttgagttc tgaggagcac aagtgcatga cccacaaaga gagaaagacg
      301 atcttctgtg atgagaacag ggttcttctc tgtcagttgt gttctaaatc ccaggagcac
      361 agaggtcaca gacactgcca cattgaagaa gctgttttga agcaaatgga gaaacttcta
      421 aagcaaatgg aatctttatt gaagaagatc caagaacttc aggagaatct agaggcagag
      481 aagacaatga ctgatcagtg gatggactac gtgaccctac gggaggagat gatcaggaca
      541 gagtatagga aactatatcc atcccttgat gaagaagagg cgcaacatat agagtgtatg
      601 aaaaatcaag gcaacactaa tttagaggag ctcaggaaaa gtgaagccat gatggtccac
      661 aagaggagtc aactaatgaa agtgtatcag gagcttatga caatgtccca gaagccatat
      721 gaggtgctgc agcagggttt ggatgacctg tttagaagat gtgagttagt gcagctgggc
      781 atgccgcagg ttatgaaacc agaactcagt gcccatccca atgctgggtt gactgcaagg
      841 ttcagtttct tcaaagtgaa aattttcttt caaaatttaa tcatactcaa ttgcaagatg
      901 agccaatttt ttgatatcag aaggttcact agtagacctt gccatcaaaa cacatccctg
      961 gattcagctg ggtcctatcg tgcttcctgg ggagcaatgg acttcaccac tgggaaacat
     1021 tactgggagc tggatttgaa ggactgtgag cactgggctg taggggtctg cagcaatgtc
     1081 tggttatcga ggagccacaa aaagattgga tctagcggtg catttcttct tgtgtgcgtc
     1141 aaggagggta atcactacag tctcttcact acgtgtccag tatctcacca ctacatagag
     1201 aagccaacag gccgggttgg cgtgttcctt gactgtgagg gtggatgcat gagtttcctg
     1261 gatgtagcca agagttccct catacacagc taccatccag aagctttcag tctcagagtc
     1321 aggccttttt tctccactgt ctacacacga tcatag
//
