LOCUS       NM_001013955            2513 bp    mRNA    linear   ROD 21-MAR-2023
DEFINITION  Rattus norvegicus tripartite motif-containing 42 (Trim42), mRNA.
ACCESSION   NM_001013955 XM_236769
VERSION     NM_001013955.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, Luzi L,
            Riganelli D, Zanaria E, Messali S, Cainarca S, Guffanti A, Minucci
            S, Pelicci PG and Ballabio A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J 20 (9), 2140-2151 (2001)
   PUBMED   11331580
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC087151.1.
            
            On Apr 20, 2005 this sequence version replaced XM_236769.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC087151.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..2513
                     /gene="Trim42"
                     /note="tripartite motif-containing 42"
                     /db_xref="GeneID:301106"
                     /db_xref="RGD:1359699"
     exon            1..485
                     /gene="Trim42"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..2316
                     /gene="Trim42"
                     /codon_start=1
                     /product="tripartite motif-containing protein 42"
                     /protein_id="NP_001013977.1"
                     /db_xref="GeneID:301106"
                     /db_xref="RGD:1359699"
                     /translation="MDTAMCVCSPCCTWQRCCPRLFSCLCCKFIFTSERNCTCFPCPY
                     KDERNCQFCHCTCAENPNCHWCCCSWANDPNCKCCCTASTNLKCYYYESRCCRNVTVT
                     FRKGRLRSIRTSSKTALRVGSSDTQLDEPKTMPASSHLVNHLTCPMCNRLRLHSFMLP
                     CNHSLCEKCLRQLQKHAEVTENFFILICPMCNRSHCMPYSHQMHLPENYLRGRLTKRY
                     MQQHGYLKWRFDRSSGPILCQVCRTRRIAYKRCVTCRLNLCNDCLKAFHSDVAMQDHV
                     FVDTSAEDQDEKICIHHPSSRINEYCRSDNQLLCAFCKIAFHNGHDTVSLIDACSERS
                     AALFSAIAKFKAVRYEIDNDLMEFNILKSSFKADKEAKRKEVRNGFLKLRAILQEKEK
                     IIMEQIENLEVSRQKEIEKYVYITTMKVNEMDGLIAYSKEALKETGQVAFLQSAKILV
                     DQIEEGIQNTFRPDPQLRLHSLHCIPLDFAELSSAIHELFPTGPKKTCSSGDSLPSQY
                     PVHSEMMIARKVTFSTHSFGNQQIYQRSSSLISFNTANDKGKAGLENYGRAQSAAPAK
                     TTDGLYTYWSATGETQPPQSSNSFHNWYSFNDTSVRTPGPIVIYQTLVYPRAAKVYWT
                     CPTEDVDSFEMEFYELITTPPNNVRTELCGQIRDIMQQNLELHNLTPNTEYLFKVRAI
                     NENGPGQWSDICKVVTPDGRGKNRAKWGLLKNIQSALQKRF"
     exon            486..1183
                     /gene="Trim42"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..2004
                     /gene="Trim42"
                     /inference="alignment:Splign:2.1.0"
     exon            2005..2229
                     /gene="Trim42"
                     /inference="alignment:Splign:2.1.0"
     exon            2230..2488
                     /gene="Trim42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acctggccag cttcctgcca caactcccaa actgccagcc tcaccagagt gggcaagagt
       61 cccgaaggga gagaagtgat ctcaggaatc cggtagtgga cgctgtcaag actccagagg
      121 ccttgtacca gggatctaag agccatggac acagctatgt gtgtctgttc tccatgctgc
      181 acctggcaga gatgctgccc ccggctgttc tcctgtttat gctgcaagtt catcttcacc
      241 tcggagcgga actgcacctg cttcccctgc ccctacaagg atgaacggaa ctgccagttc
      301 tgccactgca cctgcgcgga gaaccccaat tgccattggt gctgctgctc ctgggccaat
      361 gaccccaact gtaagtgctg ctgcacagcc agcaccaatc tgaagtgcta ctactatgag
      421 agccgctgct gccgcaatgt caccgtcaca tttagaaagg gtcgccttcg aagcatccgc
      481 acctcctcaa agaccgccct ccgcgtgggg agcagcgaca ctcagcttga tgagcccaag
      541 accatgcctg ccagcagcca cctggtgaac cacctcacct gccccatgtg caaccggctg
      601 cgcctgcact ccttcatgct gccctgcaac cacagcctgt gcgagaagtg cctgaggcaa
      661 ctgcaaaaac acgctgaggt cactgagaat ttcttcatcc tcatctgccc catgtgtaac
      721 cgctcgcact gcatgcccta cagccaccag atgcacctgc cagaaaacta cctgcgcggg
      781 cgcctcacca aacgctacat gcagcagcat ggctacctca agtggcgctt cgaccggtcc
      841 tcgggaccca tcctctgcca agtgtgccgc acccggcgca ttgcctacaa gcgttgtgtt
      901 acctgtcgcc tcaacctgtg caatgactgt ctcaaggcct tccactcgga tgtggccatg
      961 caggatcacg tcttcgtgga caccagcgcc gaggatcagg atgagaagat ttgcatccac
     1021 catccatcca gccgcatcaa cgagtactgt cgcagcgaca accagctact ctgcgccttc
     1081 tgcaagatcg ctttccacaa tggccatgac acggtcagcc tcatagacgc ctgctccgag
     1141 aggtctgcag ccctcttcag cgccatcgcc aagttcaaag cagtccgata tgagattgac
     1201 aatgacctga tggaattcaa cattctgaag agtagcttca aagctgacaa ggaagcaaag
     1261 cggaaggagg tccggaatgg attcctcaaa ctgcgagcca tccttcaaga gaaagagaag
     1321 atcatcatgg aacagatcga gaacctagaa gtgtccaggc agaaagaaat tgagaaatat
     1381 gtatacatca caaccatgaa agtgaacgaa atggatggtc tgattgccta ttccaaggaa
     1441 gccctgaagg aaacaggcca ggtggcgttc ctgcagtctg ccaagatcct ggtggaccag
     1501 attgaggagg gcatccagaa taccttcagg cctgaccctc agctgcggct tcactcccta
     1561 cactgtattc ccttggactt tgcagaactc tccagtgcca tccacgagct ttttcccaca
     1621 ggacccaaaa agacttgctc ttcaggggac tcactccctt cccagtatcc tgtccactcg
     1681 gaaatgatga tcgccaggaa ggtcacattc agcacccaca gcttcggcaa ccagcagata
     1741 taccagcgga gctcttcctt gatatccttc aacaccgcca acgacaaggg caaggcgggt
     1801 ctagagaact atgggagagc ccagtctgcc gcacctgcca aaacaactga tggcctttat
     1861 acttactgga gtgccacagg ggaaacccag cctccgcaga gtagcaacag cttccacaac
     1921 tggtattctt tcaacgacac ctctgtgagg accccaggcc caattgtcat ctaccagact
     1981 ctggtatacc caagagcggc caaggtttac tggacgtgcc caacagaaga tgtggactct
     2041 tttgagatgg aattctatga gctcatcacc acccctccta ataatgttcg cacagagctc
     2101 tgtggacaaa ttcgagacat catgcagcag aacctggagc tgcacaacct gacccccaac
     2161 accgagtatt tgtttaaggt tagagccatc aatgaaaatg gtcccgggca gtggagtgac
     2221 atctgcaagg tggtaacacc agatgggcgt gggaagaacc gagctaagtg gggactgctg
     2281 aagaatatcc agtctgccct ccagaagcgc ttctgagcct tggagtaccc ctcagaactc
     2341 tactgctcat agagatacct atatgtatat gtatgtattt ttctcaccac attcttcaag
     2401 gaggttgtag atggacgttt ccagtacctc tgggttttcc aaaaggagtc tcctaaaagc
     2461 caataaaagg aaatgtctga catcataaaa aaaaaaaaaa aaaaaaaaaa aaa
//
