LOCUS       NM_001134737            3552 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 41 (Trim41), mRNA.
ACCESSION   NM_001134737 XM_001069403 XM_220357
VERSION     NM_001134737.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3552)
  AUTHORS   Thiebaut R, Esmiol S, Lecine P, Mahfouz B, Hermant A, Nicoletti C,
            Parnis S, Perroy J, Borg JP, Pascoe L, Hugot JP and Ollendorff V.
  TITLE     Characterization and Genetic Analyses of New Genes Coding for NOD2
            Interacting Proteins
  JOURNAL   PLoS One 11 (11), e0165420 (2016)
   PUBMED   27812135
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3552)
  AUTHORS   Woodsmith J, Jenn RC and Sanderson CM.
  TITLE     Systematic analysis of dimeric E3-RING interactions reveals
            increased combinatorial complexity in human ubiquitination networks
  JOURNAL   Mol Cell Proteomics 11 (7), M111.016162 (2012)
   PUBMED   22493164
REFERENCE   3  (bases 1 to 3552)
  AUTHORS   Chen D, Gould C, Garza R, Gao T, Hampton RY and Newton AC.
  TITLE     Amplitude control of protein kinase C by RINCK, a novel E3
            ubiquitin ligase
  JOURNAL   J Biol Chem 282 (46), 33776-33787 (2007)
   PUBMED   17893151
  REMARK    GeneRIF: RINCK is an E3 ligase that specifically recognizes the C1
            domain of PKC isoforms
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB784926.1, CB714434.1, CB615599.1, BC168206.1, DY315972.1,
            BP492647.1 and AW434688.1.
            
            On or before Sep 5, 2008 this sequence version replaced
            XM_220357.4, XM_001069403.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168206.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840117 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-404               CB784926.1         51-454
            405-536             CB714434.1         83-214
            537-955             CB615599.1         130-548
            956-2774            BC168206.1         1-1819
            2775-2795           DY315972.1         595-615
            2796-3276           BP492647.1         1-481
            3277-3552           AW434688.1         1-276               c
FEATURES             Location/Qualifiers
     source          1..3552
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q21"
     gene            1..3552
                     /gene="Trim41"
                     /note="tripartite motif-containing 41"
                     /db_xref="GeneID:303088"
                     /db_xref="RGD:1308885"
     exon            1..1518
                     /gene="Trim41"
                     /inference="alignment:Splign:2.1.0"
     CDS             712..2598
                     /gene="Trim41"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif protein 41"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM41"
                     /protein_id="NP_001128209.1"
                     /db_xref="GeneID:303088"
                     /db_xref="RGD:1308885"
                     /translation="MAAVAMTPNPVQTLQEEAVCAICLDYFTDPVSIGCGHNFCRVCV
                     TQLWGGEDEEDRDELDREEEEEVGEEEEVEAVGAGGGWDTPMRDEDYEGDMEEEAEEE
                     EEGVFWSSGIGGSNWDNMDYVWEEEEEEEELDYYLGDVEDLRVEDEDEEEEVLEEDEE
                     EELDPITQLPPPPAPRRCFTCPQCRKSFPRRSFRPNLQLANMVQVIRQMHPTPGRGSR
                     VNEQGICPRHQEALKLFCEVDEEAICVVCRESRSHKQHSVVPLEEVVQEYKAKLQGHV
                     EPLRKHLEAVQKMKAKEERRVTELKSQMKSELAAVASEFGRLTRFLAEEQAGLERRLR
                     EMHEAQLGRAGAAANRLEEQAVQLSRLLAEAQERSQQGGLRLLQDIKETFNRCEEIQL
                     QPPEIWSPDPCQPHSHDFLTDAIVRKMSRMFCQAARVDLTLDPDTAHPALLLSPDRRG
                     VRLAERRQEVPEHSKRFSADCCVLGAQGFRSGRHYWEVEVGGRRGWAVGAARESTHHK
                     EKVGSGGSSVSSGDASSSRHHHRRRRLHLPQQLLLQREVWCVGTHGKRYQAQSSTEQT
                     LLSPCEKPRRFGVYLDYEAGRLGFYNADTLAHVHTFSAAFLGERVFPFFRVLSKGTRI
                     KLCP"
     exon            1519..1614
                     /gene="Trim41"
                     /inference="alignment:Splign:2.1.0"
     exon            1615..1845
                     /gene="Trim41"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..1868
                     /gene="Trim41"
                     /inference="alignment:Splign:2.1.0"
     exon            1869..1996
                     /gene="Trim41"
                     /inference="alignment:Splign:2.1.0"
     exon            1997..3535
                     /gene="Trim41"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcctgggag tcccttctgc agtcgtccgt gcctggtcgg taggatggcg ctaggccgct
       61 gcgattgtag cacggagaac agggcgctgc tcaacgtcct cgctaccctc cgccgtctgt
      121 ccccgctggc agggcatggg ggcttcttcc gctctgtacg cgttcttcgc ggccagtcat
      181 caccgagatg tgggcctccg ccgtcctagc cctcccgtcc tgttcccgcg tgtcagctag
      241 agcgtctcct cctcgtttcc tgtcgctccg gggctgggcg tgggagaagg gggcgtaaca
      301 caccctcgaa gggaactcgt gagttcaggt cgtgtggaga cgccggaagc gttgggaggg
      361 aggccggaag ctggggggcg gggccaggaa gtgaggaggg gcgggggttt atgaggaggc
      421 caggggagcg ttggggcaga tttgcactca ggtccacctg aggtacttgt cggtggtact
      481 cacctctgtc ccctcccttc tgtgagacaa ggttgtcgtc tcggggtagg ggactgtgtg
      541 tggaggggcg ggctggtcgg aggacattcc tttgcctcgc cgcaggcaag gtgtggagag
      601 gctgggcttg gggtggggac gggtcttctg ggcttcagag acgggagacc cccccgcccc
      661 acccccccgc tccccccacc gcacttctac actggctgac tggacactaa gatggctgcc
      721 gttgccatga cacccaaccc tgtgcagacc cttcaggagg aggcggtgtg cgccatctgc
      781 ctcgattact tcacggaccc cgtgtccatc ggctgcgggc acaacttctg ccgagtgtgt
      841 gtaacccagt tgtggggcgg ggaggatgaa gaagacagag atgagttgga tcgggaggag
      901 gaggaggagg tcggagagga ggaagaagtg gaggctgtcg gggcaggcgg gggttgggac
      961 acccctatgc gcgatgaaga ttatgagggt gacatggagg aggaggccga ggaggaagag
     1021 gaaggtgtgt tctggagtag tggtataggc gggtctaact gggacaacat ggactatgtg
     1081 tgggaggagg aggaggagga ggaagaactg gactattact tgggggatgt ggaggacctg
     1141 agggtggaag atgaggatga ggaggaggaa gtcctggagg aagacgagga agaggagctg
     1201 gacccgatca cccaactgcc accacctcca gcccctcgga ggtgcttcac ttgtccccag
     1261 tgtcgaaaaa gttttcctcg gcggagcttc cgccccaacc tgcagttggc caacatggtc
     1321 caggtgattc ggcagatgca tccaacccct ggtcgaggga gtcgtgtgaa tgaacaaggc
     1381 atctgtccca gacaccaaga agccctgaag ctgttctgtg aggtggatga agaagccatc
     1441 tgtgtggtgt gccgcgaatc caggagccac aaacagcata gtgtggtgcc attggaggag
     1501 gtagtgcagg agtacaaggc caagctacaa gggcatgtgg aaccacttag gaagcatcta
     1561 gaggctgtgc agaagatgaa ggccaaggag gagaggcggg tgacagagct gaagagccag
     1621 atgaagtcag agctggcagc tgtggcctca gagtttggac ggttaacacg gtttctggct
     1681 gaagagcagg caggactaga acggcgcctc cgggagatgc atgaagctca gttaggacgt
     1741 gcaggagcag cagccaaccg ccttgaagag caggctgtcc agctaagccg cctgcttgct
     1801 gaagcccaag agcggagcca acaggggggc ctgcggctat tgcaagacat caaggagact
     1861 ttcaataggt gtgaagagat acagttgcag cccccagaga tttggtcccc tgacccatgc
     1921 caaccccata gccacgactt tctgacagac gccatcgtga ggaaaatgag ccggatgttc
     1981 tgtcaggctg caagagtgga cctgacactg gacccagaca cagctcaccc ggctctgctg
     2041 ctgtcccctg atcgccgtgg agtccgcttg gcagaacgtc ggcaggaggt tcctgaacat
     2101 tccaagcgct tttcagcaga ctgctgtgta ctaggggccc agggcttccg ctcgggccgg
     2161 cactactggg aggtagaggt gggtgggcgg cggggctggg cagtgggtgc tgcccgtgaa
     2221 tcaacccatc ataaagaaaa agtgggctct ggggggtcct ctgttagcag tggggatgcc
     2281 agctcctcac gccatcacca tcgccgccgc cggctccatc tgcctcagca gctcctgctt
     2341 cagcgggaag tgtggtgcgt gggcacccac ggcaaacgat accaggcgca gagctcaaca
     2401 gagcagacac tgctgagccc atgtgagaaa ccacggcgtt tcggcgtgta cctggactat
     2461 gaggctgggc gcctgggctt ctacaacgca gataccttag ctcatgtaca caccttctca
     2521 gctgcctttc ttggcgagcg tgtttttcct ttcttccggg tactttccaa gggtacccgc
     2581 atcaagctct gcccttgatc agcctgccac ccgcaggggc ccctctggtc accactgggg
     2641 gggcgggtgg tggtggatgg ttgcccactg tttgggagcc cagactcctc ccactgtttg
     2701 agttgcttcc tgctccctct tgtacacagg ctacttctcc ctctaggagc ccaaaaaaaa
     2761 aaaaaaaaaa aaaacaaaac ccctccagct cagccttttc ttacccttgt ctgacaggtc
     2821 tgcatgggtc ccagtaatga acagctgcct gatatgacct tccctccctg tctacctagc
     2881 ttggtccagc tctgggtccc acatgttgga gtatggagtg tgtggagatt atttaatgca
     2941 accttttcca cccctactca acccgtcatt tctgaggctg gagggtttgg gcaaaacact
     3001 cccatgtttt ggtgcagacc agctaagttt tagaggctct gtgggaagtc agactgggca
     3061 aaagggtagt gctgtgtaaa gtctactttt cttggggaag taggaattct taagctttcc
     3121 ttccaccccc aatttctacc tccatagact ggccagaatt tagcttcagt gagatctgga
     3181 atggtcagca tgacatctct accattaccc aataaattat tttctctgtg catcttagtt
     3241 tttttcgtta ggtaggagcc caagtcttca ctgccaggct ctcttccctt ttcagtgagg
     3301 tttctggcct ctccatgcct tttagttaca tgtggttagc cctgttaggg gagctcggga
     3361 caggggtctg gatccttggg agactgttgg gtataatcta tttttctagt aaccccttgc
     3421 cttctgacac agcaacagct tttgtcctct gctttggtgg ctgaggtcag tccatgttct
     3481 tggggaggga aagtgggttg tattgcaaaa aataaaaaaa gtgtttattt gcttcaaaaa
     3541 aaaaaaaaaa aa
//
