LOCUS       NM_001009175            1853 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 40 (Trim40), mRNA.
ACCESSION   NM_001009175 XM_345077
VERSION     NM_001009175.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1853)
  AUTHORS   Noguchi,K., Okumura,F., Takahashi,N., Kataoka,A., Kamiyama,T.,
            Todo,S. and Hatakeyama,S.
  TITLE     TRIM40 promotes neddylation of IKKgamma and is downregulated in
            gastrointestinal cancers
  JOURNAL   Carcinogenesis 32 (7), 995-1004 (2011)
   PUBMED   21474709
REFERENCE   2  (bases 1 to 1853)
  AUTHORS   Hurt,P., Walter,L., Sudbrak,R., Klages,S., Muller,I., Shiina,T.,
            Inoko,H., Lehrach,H., Gunther,E., Reinhardt,R. and Himmelbauer,H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Sep 17, 2022 this sequence version replaced NM_001009175.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.62125.1,
                                           SRR26643291.42358.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-624               JAXUCZ010000020.1  1681333-1681956
            625-720             JAXUCZ010000020.1  1688527-1688622
            721-939             JAXUCZ010000020.1  1689414-1689632
            940-962             JAXUCZ010000020.1  1690028-1690050
            963-1853            JAXUCZ010000020.1  1690233-1691123
FEATURES             Location/Qualifiers
     source          1..1853
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..1853
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /note="tripartite motif-containing 40"
                     /db_xref="GeneID:365528"
                     /db_xref="RGD:1359645"
     exon            1..624
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..1029
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif-containing protein 40; RING finger
                     protein 35; tripartite motif protein 40; probable E3
                     NEDD8-protein ligase; tripartite motif-containing protein
                     40-like"
                     /codon_start=1
                     /product="E3 ubiquitin ligase TRIM40"
                     /protein_id="NP_001009175.1"
                     /db_xref="GeneID:365528"
                     /db_xref="RGD:1359645"
                     /translation="MVPLDKDNQDICPICLDPLKEAVSTDCRHLFCRMCLIRHMDKAS
                     VSGVLSCPVCRKPCSETVLGDNYICHTHQKRVCRFCESSRHLLCEECLQSPEHRAHTE
                     LSIENAISHYKERLNRRSRKLRKDLGDLQRLKAQEEKMLQALQVDWGSHRPRTEQQNQ
                     DQTELQQKALPRHWLDQREDPPEEVAKVFNFSEAVTQLSILVSSLERMAKELDASTLK
                     DASDLLDRSSQQKLEGLLSHVPPANSKLS"
     exon            625..720
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /inference="alignment:Splign:2.1.0"
     exon            721..939
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /inference="alignment:Splign:2.1.0"
     exon            940..962
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1853
                     /gene="Trim40"
                     /gene_synonym="Rnf35"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcattgata gtttacttct ggccatgaca ataacgaggt ggcctaaaat ttaactttga
       61 actgtaagaa gattccacag aaaactctca aaacagaact ggggtttgga tcacctgtac
      121 aaagaatata gaatattcta gactctctga tacagcgtgg acagtggctt gaagtccagg
      181 cctgagtccg ctctatcttg ctccagatcc gcttccactg aaccctctca cctgggacta
      241 tctggccttc aaaagatcca gtggggagac tagtgaggtg ggaccatggt ccctcttgac
      301 aaggacaacc aggacatttg tcctatctgc ctggatcccc tgaaggaggc tgtgagcacc
      361 gactgcagac accttttctg ccgcatgtgc ctgatccggc acatggataa ggcttcggtc
      421 tccggggttc tcagctgccc ggtctgcagg aagccctgtt cggagacagt ccttggagac
      481 aattacatct gccacactca ccagaagagg gtgtgcaggt tctgtgagtc tagcagacac
      541 ctcctgtgtg aggaatgcct ccagtccccc gaacaccggg cccatactga gctctccatt
      601 gaaaatgcca tcagccacta caaggaaaga ctcaatcgga gaagcaggaa gctcagaaag
      661 gaccttgggg accttcaacg gctgaaggct caggaagaga agatgctcca ggctctgcag
      721 gttgattggg ggagccacag gccaagaact gagcagcaga accaagacca aaccgagcta
      781 cagcagaagg ccctccctcg gcattggctg gaccaacgag aggacccgcc agaggaggtg
      841 gccaaggtct ttaacttctc tgaggcagta acacagctca gcatcctggt ttccagtctg
      901 gaaaggatgg ccaaggaact ggacgccagc accctgaagg atgccagcga cttactggac
      961 aggagttcgc aacagaaact agaaggactt ctctctcatg ttcctccagc caactctaag
     1021 ctcagttagt tcttctggtg cggtctcacc cccacaactc tcgtctgatg ccttagcttc
     1081 tgacactggg acatagtctt cttcctaagc cagacttgaa cctgtggctc ccactgcttc
     1141 agccaggcat ttcagatctt cgtcacatcc agggacattt gcacaatctc catgtggccg
     1201 tgcactggtg gtcttacctg ctgcccgtgg tctcgtgtgg gtattaaagc atctggatga
     1261 cacgacagag tgagctagcc tcagctcttg gagcttggca ggttaattag gacatattcc
     1321 ttctgactct gacagaacct cctgtctgta cagcccacat tgttcattca tgatgaccgt
     1381 tgaacgcggg ctccagggtg atttccacag tcttcaccct catgttcatg tacatgtaac
     1441 tttgtcctct ggagtacgag tggcatctat gacttgcttc tcatcaaagg aagatagcag
     1501 aagtggtgga ggtcactgtg gtgaccacgg actctttcct gctgaatgga ctccagatgc
     1561 attccagaga ctcttcttgc taacgttagt gatgttgagg ggaaagatat gtgggcagct
     1621 tcttgtttct tagagcaacc tccattttcc agatgatagg aatcaggggg tctggggctt
     1681 gcagttgcag taaacccttc taacaccaca agtagatact tctgggaact gaaacggccc
     1741 ctactagtca ccctgtcccc cgccccatag tttccataag gtctggaaaa tggtaggttt
     1801 tttttttctt atttctgcat ctgttttcac aataaactct cttattattt aaa
//
