LOCUS       XM_039096440            6706 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif containing 38
            (Trim38), mRNA.
ACCESSION   XM_039096440
VERSION     XM_039096440.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039096440.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 5% of CDS bases
            internal stop codons :: corrected 3 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6706
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6706
                     /gene="Trim38"
                     /note="tripartite motif containing 38; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins, and 96% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:680019"
                     /db_xref="RGD:1596868"
     CDS             5168..6283
                     /gene="Trim38"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 3 bases at 3
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:5573..5575,aa:OTHER)
                     /transl_except=(pos:5903..5905,aa:OTHER)
                     /transl_except=(pos:5945..5947,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase
                     TRIM38"
                     /protein_id="XP_038952368.1"
                     /db_xref="GeneID:680019"
                     /db_xref="RGD:1596868"
                     /translation="MGSDFSTVKSRKVTFCSICKAMMSHPVSINCGHSYCKSCTQSHY
                     CNVSSKTGWKMLGCPLCSSPFSLENLRPNKELETITDMIKGIEGQDHDTVCEEHEEKL
                     NRFCGDDGQLLCWRCCWEDQHKGHTLFAVNDVYXNYKKKLQNTMTKLSELQETLEVQI
                     HFITSQINAWKVFGHSKELCLLHSYNWLWFFIVNVIQDPSTAHLNLALSKGGRLVTYK
                     RCHRDLQASAKRFYDLPCVLGSEGFTVXRYYFEVSVENATSXDVGVCLETVQRGFNMK
                     KELEFGFWTIKMSEEDGLEALTSAPTPLLYLSEKPQLVGVFLDYEAGVVSFYSVTTGS
                     HIFTFPKASFWDTLRPIFQVYQHSPLFPPAINNHGKK"
ORIGIN      
        1 tagggataag ggcaacttct tcctttcatt tcacatcacc ttttatttct ttaaacaccc
       61 tgaagcagat acagtcatgt tggcattttt gttttagcta ttttatttgg gttttcatgt
      121 atctctattc aaacccttat ttccagcagg gctccaaaac caggtaggag agaaagaagg
      181 ttagagagga aatggggcat aggtctcttt aaactacttc ctgttgaatc agttccttgg
      241 ggcaaatcca atcttccatt taagtcagaa ttttctccaa tttcttgctt cttttctctt
      301 gaccatcaac aggagcagaa accatcagga ggaataaccc tgtcttcttc agagcacccc
      361 tctatttttc aaagctctct ctgactctag catttacatc ttcttcatag tgcccagaag
      421 taaaccattt gcagctggca gaatcaaatc cttaccagag catgcgcaag tcaaaagtct
      481 gcagctgtgg ataatctagg cagctccaaa taccacacct ggaattaaaa caaacatgtt
      541 tatataacaa agattttaaa gaaaccaaaa gtcttcatta cacagtcaga cgtatttaaa
      601 agtgggagca ttcagtgcac atagttccat tacattattt ggggggcgaa attgggattc
      661 cactcggtct ttcacaagga aggtcagtta agtctaccaa tccagaaagg gcggatcaca
      721 cttaggctcc gcccatcctc cgctcgcccc aaccttggga gcccactcag gtcttgtctc
      781 attctattgc catcttcact tccagtctcc agctccaatc ccgacttctc ggcgtaggaa
      841 atcaaggcac ctccggccta acttccggcg cttggctcat ctatcagata attggacgct
      901 gggtttgagc ggaccaatca gaagcgtcgg gaatcaagcc ttactggcag agctgtggcc
      961 agaggagcta agtttaccac cctgggaggt ctccagcctg gagtctgaag catgctccct
     1021 aggaggcgtc tccgcctgca gttcaggagc acatctcata aatagccgaa attctgtgaa
     1081 atctcacagg aaaacgattt ttctttttct ttttcttttt tttcaaaaca aaatatggca
     1141 aacttctttt ttagttattt acacagtaac aaagcaatgg gtctcttttc aacacttctg
     1201 gatattataa tctcctcaca tctttcctgg ttgcaactct ctggttcttc tcctgcccct
     1261 aaataagctt cctctgcctt ctggtcacag ctctctttga cctctcattc ccccatctct
     1321 actgttacaa cctctccttt ccttaccaat cccgtttcta gttaattcac acacacaccc
     1381 ccaacacata caaatttaaa tctagttttc atatatgaga aaatatgcgc tatttgtttc
     1441 tgggtctgtt ttctttttgt ttgggttagc aagatttctg gctccaaaca aataaactca
     1501 tgaacctatt gttttaaata ttgagtggac agctctgtgt gtgtgtgtgt gtgtgtgtgt
     1561 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgttttc tcttgcaact cattgcacga
     1621 ctctggagtt gaaggttctc tggttaataa tcggatttgg tcccctactg ctgatgagga
     1681 agacactgat tcagggtgct ctccccatca atcactagtc aagtaaatgc cctacagctg
     1741 gatcttatgg aggcagcttc tcaattaaga gtctcttctt tcaagctgac acaggagggt
     1801 gtttctgggc tttacctttg ggagctttgg gagggtatct ctggggcctt atctacaaac
     1861 atctccctcc tatgttctgt tactcatacc cacttgtttc ctcatgagac agacacagat
     1921 gtgagactca actgtcccaa gacagactcc attttgtttt tgtgtttcta gtgttttgtg
     1981 gggctagtgg tagttgtttt gggcactcac aaccgtccat ctcttccatt gagatgaact
     2041 acacttgagt attgtctcac aaatacataa caaaagctat ggttatctga aggggtcatc
     2101 ttggaatcca gggcacaggg gctccttctt tctcatggtg cctcagcact gatatggtct
     2161 caggatttca ctgtgcgaag agtctgctgt ttggagtggg aaggtagaaa cctgtctaac
     2221 gtttacctct agcctgagtt aagatgaact ccatgctttc tttgcaacct gaggacccag
     2281 cactgagtat gagtaactac caggattatt ccctggggga ctccagagtc caagtaactc
     2341 attctccatc ctatgctctc agtccccttt gccagctcct tcaagccatt gtacatgttt
     2401 attccttaag caagcaggaa agaatttata tacttgcccc attcacctgc agctacaaat
     2461 gtgatcagcc ttgcttaaat acgaataaat gattcatttc cctcctttct ataattctgt
     2521 cttagttagt gaaatcactc ttgttggatt ttggaatagt gaggctgagg ctgacatgct
     2581 cacttccagc cttttctcca taaagccctg agcacacttg gcatataggt gactgtcctg
     2641 actaccttaa tagtagtggc tgttgtttcc tggtctgtag ttctgtgtct tgtaattgca
     2701 ccatatttgt gtcctgcaga gaagtggtga ggaggaaaag gcaacaactc cgcaggacag
     2761 agaaacatag ctggcgggct tggagaaatt ttatcatgtt agtgatccac tgtaacaact
     2821 tccctttgca ccactgccac caaagcagtt atgaacggat aagccacctc aaaatgctaa
     2881 tgaagcaaca gagctttaga aaccttttga gtttcaagag ggttgggagt aaaagtcgat
     2941 agatctcaca tcagagcata tcctgccctt ctgccctctc tgctgggtca caagagagtt
     3001 ttgaactttg tctctaattt gttctttgtg ttaaatgctt tacattatgt tccttttgtc
     3061 catctccccc tcccctttct ttttaaagat aaaaaggttc aaagaccaga gcaactttat
     3121 tggctgtcaa ttagcctccc atagtgcttc cattttttca aataactcag cagagattcc
     3181 taggtttctg taagtgacaa gtgctcagca gggcaccaat ggatcaatga ttgttttact
     3241 ggagatttag agggacaaac agtggagagt gttgtctcca gaaaatcaga gaccgctccc
     3301 ctacaactct gaaaggattc aggacttggg cagctcttac gttggcatct gcttttgctt
     3361 ctcaaatagc gcaaggaatc tcagaaaatc cagaatacag gtgagtgaag cttaggccag
     3421 gccaggctgc tggggccttt gaagtggccc cttggctaag aatgtgatgt ccctttcaag
     3481 aaggcccatg gggtcagtat ccttccttca gaagaaatcc tttgccattc tttctgtctt
     3541 ggttttaaga ggaagacagc ctgtttagaa gttcagttga acttctgttt taattctctc
     3601 tctctctctc tctctctctc tctctctctc tctctctctg tgtgtgtgtg tgtgtgtgtg
     3661 tgtgtgtgtg tgtagaacta ggatgggtct cagaagcagc tgccatagaa caggaagcaa
     3721 aaagcactgc tcttaaatag ccttctactc cctttggttg tcagtgtgtc ttcctgggcc
     3781 atatcagaac tatagctctc attgaagtct ggcctccttc ccactttctc tgtagcctag
     3841 gctctggcat gacactccct aagttcacat cacctgaact tctgggagca gttttcagcc
     3901 acagagaaga gacaggaatc ccctggttct ccagaaatgt tgttccccct ctcccctctt
     3961 cagccctctt tccagttctg ttagtaccag aataaaccaa ttcttggcca gacatggtgg
     4021 tacaaactag tgtaatgcca gaaggcaaag acaaacagat tgactcattt attcctataa
     4081 ttagaagagt tggtcatttc ttggtggcct gtttcctata tgttcctttt tctgtgtttt
     4141 tatttttata tgctgtgtca tgtcttctta atcctctgcc ttctctttaa gtcctggtat
     4201 tctatcttcc acttgatcca tcctacttgg gaggaatttg tttgggtttt ctagtagggt
     4261 tatttggttt ttcagttccc tcttcatttt taccttgagt caactgcaat gtttctatct
     4321 cttcactgaa ctctgttttg gagacttgaa ctgtctttgt catctccatc agccacgttt
     4381 gtgtcttctt gaacatcact caggctttta ttctcttcaa attcattgag atgtgtttct
     4441 ggctgagaag agaggttgga tgtggcctgg gtggggccaa atgggtcaag ggcagacagg
     4501 tcatagtgga agcttagaag ttggttttga catggttagg agtggccaga ttaggttaga
     4561 gcactggata tgggacccag ggttagatct aggagttcct gaaggtacat agaaggggga
     4621 gagtgtcagg cagacttgcc catctagacc caagagaaga tctggctgct cttgatctgg
     4681 ctagatagag gggttgaatg cccctacagt taaaagtaat tgcagctcat ggaaactttt
     4741 catactctct agctgagttc aacttctgaa ccttgccttg cctctgccat tctcagcaca
     4801 tggcacaaga gaacactgga caaaaatgga ctgctctata gctgagccat catgtagaca
     4861 cccggtgcat ttggcaatta ggaaaatgga atgtgagcaa taaaactggg aaactatact
     4921 taaaaatgat taaactttta ttaagttgaa tgtaaatggc tacatgggat agtggttatt
     4981 atgtaaatac aatgagatat ttatgtatct tctcaattct aagctgtttc tcttttctag
     5041 agactaaaaa cctctgaaac cggtaactgt cagttgactg catttaaatt taggtgaggt
     5101 ttacatcggc cactgtggaa aacattcctc tacttctgat tgctttggaa acttctcagg
     5161 aaaagccatg ggctcagact ttagcacagt gaagtcaaga aaggtcactt tttgctccat
     5221 ctgcaaggcc atgatgtctc acccagtgag catcaactgt ggacacagct actgcaaatc
     5281 ctgcacacag agccattatt gcaatgtcag ctcaaagaca ggatggaaga tgttgggctg
     5341 ccctttgtgt agtagtccat ttagtttaga gaacctcagg cccaacaagg agctagaaac
     5401 cataactgat atgatcaaag ggatagaagg gcaggatcat gacacggtgt gtgaggaaca
     5461 tgaagagaaa cttaatcgct tttgtggaga tgatggtcag ctcctctgct ggcgctgttg
     5521 ttgggaagat cagcacaaag gtcatacctt atttgctgtg aatgatgtgt actagaacta
     5581 taagaaaaaa ctccagaata ccatgacaaa attgagtgaa ctccaagaga ctctcgaagt
     5641 tcagatacat ttcataacaa gccaaataaa tgcctggaag gtatttggtc acagtaagga
     5701 actgtgttta ctgcatagtt acaactggtt atggtttttt atagtcaatg tgatccagga
     5761 ccccagcaca gcccatctca acctagctct gtctaaaggt ggaagactag tgacttacaa
     5821 aagatgccac agggatcttc aggcttctgc caagaggttt tatgatttgc cctgtgtcct
     5881 aggctctgag ggttttactg tatgaagata ttactttgaa gtctctgttg agaatgcaac
     5941 cagttgagat gtaggagtct gtttagagac agtgcagagg ggctttaaca tgaagaagga
     6001 gcttgagttt ggattctgga ctatcaagat gtctgaagag gatggccttg aagctctcac
     6061 ttctgcccct actcctctcc tttatctgag tgaaaagccc cagctagtgg gagtttttct
     6121 agactatgag gctggagttg tatcttttta cagtgtaacc actggctccc acatcttcac
     6181 cttccccaag gcttctttct gggataccct gaggcccatt ttccaggttt atcaacattc
     6241 tcctttgttc cctcctgcca taaataatca tggaaagaag taaagtccct ataccttaag
     6301 tagcatcgta gaaaatccat aaatcccaca aggcagaaac tttgtttttc ttcactgcta
     6361 attccaatgt ttttaatgaa ctttcaataa atgtgctttg aattaataac acttttaaac
     6421 gtgttgaata ttgaatgatt caaaacatat tgcacagtcc ctgtgttcag acaaaaaaaa
     6481 ttgaggtaat tattgttttc tgtttatagt gggcacagct gtgaggaact ttttttaaat
     6541 taaatcatta aaattggaat acccacttgt aatttgggcc acatctcctg ctggaagtct
     6601 atataaagga catggaagaa ggaagcacgt tcgttctctc tctctctctc tctctctctc
     6661 tctctctctc tctctctctt tctctctctc tctctccttt tccccc
//
