LOCUS       NM_001276491            2566 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 34 (Trim34), mRNA.
ACCESSION   NM_001276491
VERSION     NM_001276491.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2566)
  AUTHORS   Uchil,P.D., Hinz,A., Siegel,S., Coenen-Stass,A., Pertel,T.,
            Luban,J. and Mothes,W.
  TITLE     TRIM protein-mediated regulation of inflammatory and innate immune
            signaling and its association with antiretroviral activity
  JOURNAL   J Virol 87 (1), 257-272 (2013)
   PUBMED   23077300
REFERENCE   2  (bases 1 to 2566)
  AUTHORS   Li,X., Gold,B., O'hUigin,C., Diaz-Griffero,F., Song,B., Si,Z.,
            Li,Y., Yuan,W., Stremlau,M., Mische,C., Javanbakht,H., Scally,M.,
            Winkler,C., Dean,M. and Sodroski,J.
  TITLE     Unique features of TRIM5alpha among closely related human TRIM
            family members
  JOURNAL   Virology 360 (2), 419-433 (2007)
   PUBMED   17156811
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.2907.1,
                                           SRR26643291.2386.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               JAXUCZ010000001.1  168119043-168119178
            137-756             JAXUCZ010000001.1  168122425-168123044
            757-852             JAXUCZ010000001.1  168123565-168123660
            853-1083            JAXUCZ010000001.1  168124357-168124587
            1084-1106           JAXUCZ010000001.1  168126301-168126323
            1107-1207           JAXUCZ010000001.1  168128443-168128543
            1208-1234           JAXUCZ010000001.1  168128802-168128828
            1235-2566           JAXUCZ010000001.1  168129213-168130544
FEATURES             Location/Qualifiers
     source          1..2566
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..2566
                     /gene="Trim34"
                     /note="tripartite motif-containing 34"
                     /db_xref="GeneID:101241893"
                     /db_xref="RGD:7240857"
     exon            1..136
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     exon            137..756
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     CDS             337..1797
                     /gene="Trim34"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif-containing protein 34"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM34"
                     /protein_id="NP_001263420.1"
                     /db_xref="GeneID:101241893"
                     /db_xref="RGD:7240857"
                     /translation="MASTDQTDVQKEATCPVCHVLLIKPLNLGSGHHVSQACLTVKKT
                     AVTNPRGKSLCPMCGNRFSFENLQANKHLADVVERLREVKLSPDIGKKGDLCVHHGEK
                     LLLFCQEDKKVICWVCERSQEHRGHHTFLRDEAVRECQENLQEALKRLRKEQEKVETF
                     EADIKEDRISWKHQIQTERQRIQTGYNQLRRILDKEEQNELKRLREEEQMILDSLAGA
                     EAELAQQSQLVEELISDLERRCEWSDTELLQDVSGILKWSQIWTLKKPKAVSKKLKMV
                     FQAPDLSGMLQKFRELTAVRAYWADFTFNPENLNLNLILSEDHRQVTSVPIWPFKCCN
                     NGILGSKCFLSGKHYWEVDVSEKNAWTLGVYSRKRTLKFDVRRCSKSQPNGYHRYKPQ
                     NGYWVIGLQDGSKYSIFEDSSNCGPTVLNPFVATPLHRIGVFLDCEEGIVSFFNVTNH
                     GSLIYKFTQCRFSQPAYPYFNPWDCPAPMTLCPRNA"
     exon            757..852
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     exon            853..1083
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1106
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1207
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1234
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..2566
                     /gene="Trim34"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tggtctggag tttcagtttc tttttctcgg catccagaaa ggggggcgct gctggttggc
       61 tgattaaagc ctgcccctgg cttttcctca ccgcccgctt ctgcagggaa gaaagatttc
      121 accttctggg cctgagattc tgtctgatca cggctgaaaa ctgagtgctt tcaaccatag
      181 tattgtccac tttgaaggag tcttagtggc cgtgttgcct tgagttgtct ttgaggactg
      241 attcaccatt tgttttataa tcctcctagc catccagtag cccttaagaa agaagagcct
      301 cagaggtcag gacaggaaag gacagggggc agcataatgg cctcaacaga tcagacagat
      361 gtacagaagg aggccacttg ccctgtctgc cacgtgcttt tgataaaacc cttgaatcta
      421 ggctctggcc accatgtatc ccaagcctgc ctcaccgtga agaagactgc agtgaccaac
      481 cccagaggga aaagcctctg tcctatgtgt ggcaatagat tctcatttga aaatctacag
      541 gctaataagc atctggcaga tgtagtagag agactcaggg aagtcaagtt gagccctgac
      601 attgggaaaa agggagatct ctgcgtacac catggagaga aactccttct cttctgtcaa
      661 gaggacaaga aggtcatttg ctgggtttgt gagcgttctc aggagcatcg tggtcaccac
      721 accttcctcc gggacgaagc agtcagggaa tgtcaggaga atctccagga agctctcaag
      781 aggctgagga aggagcagga gaaggtggag acatttgaag ctgacatcaa agaagacaga
      841 atttcctgga agcaccagat ccagaccgag agacaaagga tccaaacagg ctataatcaa
      901 cttagaagaa tcctggacaa ggaggaacag aacgagctga aaagactcag ggaagaggag
      961 cagatgatac tagacagcct ggcaggggca gaggctgagc tggctcagca gagccagttg
     1021 gtggaggaac tcatctcgga tctagagcgt cggtgtgagt ggtcagacac agagctgctg
     1081 caggatgtaa gcggtatctt gaaatggagt cagatctgga cactaaagaa gccaaaagca
     1141 gtttctaaga aactgaagat ggtattccaa gctcctgatc taagtggcat gctacaaaag
     1201 tttagagagc taacagctgt ccgggcctac tgggcggact tcacgtttaa tccagaaaac
     1261 ctaaatttga atctcattct ttcagaagat catagacaag tgacatctgt gcccatttgg
     1321 ccctttaagt gttgtaataa tggtatcttg ggctccaaat gtttcttgtc aggaaaacat
     1381 tactgggaag tggatgtgtc tgaaaagaat gcctggaccc tgggagttta ctctagaaaa
     1441 cgtactttga agtttgatgt tagacgatgc agcaaaagtc agccaaatgg ttaccacaga
     1501 tacaaacctc agaatggcta ctgggttata gggttacagg atggatcaaa gtatagtatc
     1561 tttgaggatt cttccaactg tggccctaca gttctgaacc cctttgtggc cacccctctc
     1621 catcggattg gggttttcct tgactgtgaa gagggcatag tgtccttctt caatgtcaca
     1681 aaccacgggt cactcattta caagtttacc caatgccgct tttcccaacc tgcctatcca
     1741 tacttcaatc cttgggactg cccagccccc atgaccctct gtcctcggaa cgcctgagtt
     1801 ttctcattct catcagtttc tgatcttcct gccttgaccc tcaccttctg gatgtacctg
     1861 tggggtttgg gcacctcttc ccatggtctc ccttctgtca tgcttggatg tggtatatcc
     1921 gacatcattt agaaaagatg cttaccactt actctaactc atattctcaa agacagtgag
     1981 tcaagtctaa agctgggtca gtataacatc tgtgccctct gacttccata tttccctttg
     2041 tcttgaagaa agttgacaaa gtctgttcgg cactagctca tccctgctgt ttaagacatt
     2101 ccgtaagaac tggcccctgg ccacaactaa tgaattttta acaatgtgtt gctcaggata
     2161 tgtcatgttc aacaggaagt caaggaatag gtaacgtgaa cagcaatatg tagcctagag
     2221 ttgaggatat gtctagtatc aaattcaaat gctgcatctt gtaaactaat aaattctgag
     2281 gttcttaaac taaaaattaa agtgcatctg acttaagatc attgtatgaa actagagatt
     2341 tgtaaatata aaatacccac ttgagtgcct ggtccataag aaacatggtc ctatagtcct
     2401 ttgtactcaa tgaaatatct tgttggagta ttttaaatac ctgttgtctt caaatgctag
     2461 tttttcttcc ttgccagttt gatttcatat gtataacctc atgtggagtg tgtctggttt
     2521 taaaaataaa aggttggtct tcaatgacat tctaattcat ttgcag
//
