LOCUS       XM_345266               8434 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif-containing 33
            (Trim33), transcript variant X1, mRNA.
ACCESSION   XM_345266
VERSION     XM_345266.9
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 24, 2024 this sequence was replaced by
            NM_001427437.1.
            
            On Jan 21, 2021 this sequence version replaced XM_345266.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8434
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8434
                     /gene="Trim33"
                     /note="tripartite motif-containing 33; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 45 ESTs, 1 long SRA read, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 175 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:365894"
                     /db_xref="RGD:1307339"
     CDS             1..3435
                     /gene="Trim33"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM33 isoform X1"
                     /protein_id="XP_345267.3"
                     /db_xref="GeneID:365894"
                     /db_xref="RGD:1307339"
                     /translation="MAENKGGGEAESGGGGSGSAPVTAGAAGPTAQEAEPPLAAVLVE
                     EEEEEGGRAGAEGGAAGPDDGGVAAASSSSAPAASVPAASVGSAVPGGAASTPAPAPV
                     PVPVPVPVPAPAPAPAPAPAPAPGPSSGPPPGPPASLLDTCAVCQQSLQSRREAEPKL
                     LPCLHSFCLRCLPEPERQLSVPIPGGSNGDVQQVGVIRCPVCRQECRQIDLVDNYFVK
                     DTSEAPSSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHLIRK
                     KEDVSESVGTSGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAF
                     QNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEIN
                     KKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSK
                     RLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIESKPAPGYTPNV
                     VVGQVPPGTNHISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRLQQPPAPVPTTTT
                     TTQQHPRQAAPQMLQQQPPRLISVQTMQRGNMNCGAFQAHQMRLAQNAARIPGIPRHS
                     GPQYSMMQPHLQRQHSNPGHAGPFPVVSAHNPINPTSPTTATMANANRGPTSPSVTAI
                     ELIPSVTNPENLPSLPDIPPIQLEDAGSSSLDNLLSRYISGSHLPPQPTSTMNPSPGP
                     SALSPGSSGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKSAHSFKSDQVKVKQEPGT
                     EEEICSFSGAVKQEKTEDGRRSACMLSSPESSLTPPLSTNLHLESELDTLTSLENHVK
                     TEPADISESCKQSGLSSLVNGKSPIRNLMHRSARIGGDGNSKDDDPNEDWCAVCQNGG
                     DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNMQHSKKGKTA
                     QGLSPVDQRKCERLLLYLYCHELSIEFQEPVPVSIPNYYKIIKKPMDLSTVKKKLQKK
                     HSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVAL
                     YFEDKLSEIYSDRTFAPLPEFEQEEDDGEVTEDSDEDFIQPRRKRLKSDERPVHIK"
ORIGIN      
        1 atggcggaaa acaaaggcgg cggtgaggca gagagcggcg gcgggggcag cggtagcgcg
       61 ccggtaaccg ccggggccgc cgggcccacg gcgcaggagg cggagccgcc tctcgccgcg
      121 gtactggtgg aggaggagga ggaggaaggc ggcagggctg gcgcggaggg cggtgcggct
      181 gggcccgacg acgggggggt ggccgcggcc tcctcaagct cggccccggc cgcctcggtc
      241 cccgcggcct cagtgggctc tgcggtcccc gggggcgcgg catcgacgcc ggccccagct
      301 cctgtcccgg tcccggtccc ggtcccggtc ccggctccgg ctccggctcc ggctccggct
      361 ccggctccgg ctccgggtcc ttcgtcgggc ccgcctcccg gaccaccagc ctcgcttctg
      421 gacacctgcg cggtgtgtca gcagagcttg cagagccggc gtgaggcgga gcccaagctg
      481 ctcccctgcc tgcactcctt ctgcctgcgc tgtctgccgg agccggagcg ccagctcagc
      541 gtgcccatcc ctgggggcag caacggtgac gtccagcaag ttggtgtaat acggtgtcca
      601 gtatgtcgtc aagaatgcag acagatagat cttgtggata attattttgt gaaagacaca
      661 tctgaagctc ctagcagttc tgatgagaaa tcagaacagg tatgtactag ttgtgaagac
      721 aatgcaagtg cagttggttt ttgtgtagaa tgtggagagt ggctgtgtaa gacatgcatt
      781 gaagcacatc aaagagtaaa attcactaaa gaccatctga tcaggaaaaa agaagatgtc
      841 tcagagtctg ttggaacatc tggtcagcgt ccagtatttt gtcctgtaca taaacaagag
      901 cagttgaaac tattctgtga aacatgtgat agactgacgt gtagagactg tcagctattg
      961 gagcacaaag aacataggta tcagttttta gaagaagctt ttcaaaatca gaaaggtgca
     1021 attgaaaatc tgttggctaa gcttcttgaa aagaagaatt acgttcattt tgcagcaaca
     1081 caagtgcaga ataggattaa agaagtaaat gagactaaca aacgagtaga acaggaaatt
     1141 aaagtggcca tcttcaccct tatcaatgaa attaataaga aaggaaaatc tctcttacaa
     1201 cagttagaga atgttacaaa agaaagacag atgaagctat tacagcagca gaatgacatc
     1261 acagggctct cccggcaggt gaagcatgtt atgaacttta caaactgggc catcgcaagt
     1321 ggcagcagca cggcactact ttatagcaag cgtctgatta cttttcagtt acgtcatatt
     1381 ttgaaagcac gatgtgatcc tgtccctgct gccaatggag caattcgttt ccactgtgac
     1441 cccacattct gggccaaaaa tgtcgtgaat ttaggtaatc tagtaataga gagtaaacca
     1501 gctcctggtt atactcctaa tgttgtagtt gggcaagttc ctccagggac aaaccacatt
     1561 agtaaaaccc ctggacagat taatttagca cagcttcgac tccagcacat gcagcaacaa
     1621 gtgtatgcac agaaacatca gcagttacaa cagatgagat tgcaacagcc accagctcct
     1681 gtaccaacaa caacaacaac aacacagcag catcctaggc aggcagcccc acagatgtta
     1741 caacaacagc ctccaagatt gatcagtgtg caaacaatgc aaagaggcaa catgaactgt
     1801 ggagcatttc aggcccatca gatgagactg gcgcagaatg ctgccagaat acccgggata
     1861 cccaggcaca gtggccctca gtactccatg atgcagccac atctccaaag acaacattca
     1921 aacccaggac acgctggacc ctttcctgtt gtatcagcac acaacccaat caacccaaca
     1981 agccctacca cagcaactat ggcaaatgca aatcgaggtc ccaccagccc atcggtcaca
     2041 gcaatagaat taataccctc agtcaccaat ccagaaaacc ttccatcgtt gccagacatt
     2101 ccacctatac agttggaaga tgctggctca agtagtttag ataatctact gagtagatat
     2161 atctcaggca gtcatctacc ccctcaacct acaagtacca tgaatccttc ccctggaccc
     2221 tctgcgttat cacctggatc ttcaggctta tccaattctc acacacctgt gagaccccct
     2281 agtacgtcta gtactggcag tcgaggcagc tgcggatcat caggaagaac tgctgagaaa
     2341 agtgctcata gtttcaagtc tgatcaggtg aaggtcaagc aagaacctgg gactgaagaa
     2401 gagatatgca gcttttcagg agccgtgaaa caagagaaga cagaggatgg caggaggagt
     2461 gcctgtatgt tgagcagtcc tgagagtagt ttgacaccac ctctctcaac taacctccac
     2521 ctagagagtg agctggatac cttaacaagc ctggaaaacc atgtgaaaac cgaaccagca
     2581 gatatcagtg aaagctgcaa acaatcagga ctcagtagcc tagttaatgg gaagtctcca
     2641 attcgaaacc tcatgcacag gtcggcaagg attggaggag atggcaatag caaagatgat
     2701 gacccaaatg aagactggtg tgccgtctgc cagaatggag gggatctttt gtgctgtgaa
     2761 aaatgtccaa aagtctttca tcttacttgt catgttccaa cacttctcag ctttccaagt
     2821 ggagactgga tatgcacatt ttgcagagat attgggaagc cagaagttga atatgattgt
     2881 gataatatgc aacatagtaa gaaggggaaa actgcacagg gcttaagtcc tgtggaccaa
     2941 aggaaatgtg aacgtcttct gctttacctc tattgccatg aattaagtat tgaattccag
     3001 gagcctgttc ctgtttcgat accaaactac tataaaatta taaagaaacc aatggattta
     3061 tcaacggtaa agaagaagct tcagaaaaaa cattcccagc attaccaaat cccagatgac
     3121 tttgtggctg atgtccgttt gatcttcaag aactgtgaaa ggtttaatga aatgatgaaa
     3181 gttgttcaag tttatgcaga cacacaagag attaatttga aggctgactc agaagtagct
     3241 caggcaggga aagcagttgc attgtacttt gaagataaac tctcagagat ctactcagac
     3301 aggaccttcg ctcctttgcc agagtttgag caggaagagg atgatggtga agtaacagaa
     3361 gactctgatg aagattttat acagcctcgt agaaaacgcc taaagtcaga cgagagacca
     3421 gtacatataa agtaaaatga cgtggactta aatcagttgt ttttaagaag aaggaaacaa
     3481 acaaaacact cttttattta agtgttactg gaatatcctg tgtacagtgg tttttacctc
     3541 cttacagaag ctggtagctt tcatacagta ttagattgaa ataatggaca caaaaaacat
     3601 tcttgtcaag aaaaggagag agaactctgt ttgctacttt aagaacaaaa ttagaagtga
     3661 aaaggtttgg ggatttgtta caaatgaaga tggttctctg gctgttagaa atgtagatga
     3721 tcatgtgtgt taattggtgc aggatactga gtctggcaag cctgcaaggc tcatgttggg
     3781 agatgtgtct ctgctagagc acacagttac tcagacactg taaaagcctc tcctccacag
     3841 acacaaatgg gttgttttct ggttaaaaat gagtagatcc gattccactt gaatgtcact
     3901 aaagatgcat tgaatcatgc cactgtattt tctctcattt tgatctatcg ggccttagtt
     3961 tttaaattgg tttaaagaac tcagcagtag ttttattttc ttcttagatg tagggtctag
     4021 gaacataacc attgatcatt tagtcaactt cagtggtgta ctaaaatgat aactttcagt
     4081 cgtggatcat acagaaaacc cttctggaaa ttacacttac tggtcaaatc atctgatcac
     4141 gcagttattc ccttgaaaga cagaacattt atttcagaat tttctgtata ggtaaattag
     4201 attgagaagg tgacaactaa ctttaacccg gtctctcttc ataccagttt ccagtagacc
     4261 actattggta aacagaaatc tgtcagctac caaatgtgta caattttctg tatttcactt
     4321 tgtcttattt gtaaatagtg agctcagact tctggcagat cagcaacatt tgctgagcct
     4381 gttttttaag ctaatgtgta ttcttactaa tgttcctatc aagaatggat ttgtaatata
     4441 tgctgtctat ttctaatgtt cacattcata ttttgaggtt ctatcttatt ttaatagaga
     4501 acagacgtct caaaaaatct tcagaagcag cttattattg aaatatcaaa atattgaaat
     4561 aaacccggtg gggttagatt actcatctgt ccaccaagtg ggacacgtgc atggactggg
     4621 ggctttaaat gacttagaag agacctttaa gtaaatcctg aagacgagcc aatccccact
     4681 tgaatggtaa ttggaacaaa cctaacgtta tttactacct gatggcagga gcagaacctg
     4741 aagcagatag acctacttgc tctggtttat ttttctcctc ttcgttgtga tgctcagatc
     4801 aagtgtgctc tagactgtgt gcgcctctcc gctggattaa gagttgtagt cctacttctg
     4861 tacggacaca gtagaatata aagtgaccaa agtagaattc aacatcagaa acatttcagg
     4921 tgtcagcaga tgtgtggcaa atcatttgcc tcttaaaaaa ttcaacgtaa gcagttcaaa
     4981 ctgtagacct cctcagaaaa ctatttgacg taattgtcga agaagtgaat atttttagtg
     5041 tgcattgaat caaataaagt gctctaaaga agttactaca cagattcctt tgggtttttc
     5101 ttaagggata tgggtaacga ggagtgggac ttaggccttt ccatattaca cttaaaagga
     5161 ttgtcattct tacctcatct cctgctttcc attagcttct cttcccttat aaattaagct
     5221 tcagtttttt tgtttttttt ttttttgttc tttttttaaa tgctccaaac catttactat
     5281 tttatttcat tttttattag gggaagagat tttgtttcta aaatattttt tttatttata
     5341 cctattttct ttggcgtcca tgattttaat ttgtaagtag atgaatctct aagggtacat
     5401 ttttggcagt gggggaatgg ggggttgact tcattttctg aaacctctga gttcagtgtt
     5461 ttatatttgc ttctcatatg aatccttttc aaaattttta gcaataaatt acaaataagc
     5521 tctgttaagt gggacaaaca caggtttttc agcaaatatt tctcaatatt tgaagccctg
     5581 agagagaatg tgtttcataa aggcattctt atattacttg gtgttttgtt tccctttgtt
     5641 taagaccatc aattcagaag cttctctccg accagtgttt cgtaggctgt ttttgttagc
     5701 aaaggtgccc cactgctgag gaatggattg ctatcaacaa tacactctta aatgatagtc
     5761 actttaactt ttataaagcc cttttttgca cactgatcat tgtgttttct aggctttaac
     5821 ataagtatgt ctacaaagta gaaaaacaat tcttatttaa attatctcgt ttccctgttt
     5881 atatttttaa aatacaaata acagaatatc tgttaactcc cggatgtggg tatgatattc
     5941 ccatgttgta ttctttgtta gaatctgtac cttaaatttt gagaagtcca cataatgatg
     6001 atctcttaaa atccttcaaa gttcttgatg aacttagggt cattttttcc atcaggaaac
     6061 taaacgttcc tcagcctgct ctgctggcct taatttatgt atcaatttac atatctcagc
     6121 acttgactct gctacttgat tgagtgagtg aactgtacat caggcccagt gttaagggct
     6181 ctagggtctg gtttgatcat ggactttgct ctatatgcaa acatcaaact attaccacag
     6241 agctatgata aagcattaga tcccctttgg aatcagcggg ttttttccac ttctgtttct
     6301 tatgagggaa ttttaggtca ttacaagtca gttctcattc ttttaacaag tttgagtttt
     6361 tttttttttt tttttttttt tttttttttt tgttaaccca aagacataat gcttcaaagt
     6421 gtgcaaatta tagttttatc gattacctca gcaggtatcc tgccacgtaa ttattagtga
     6481 gttagtgtca gtaacctaaa agattcaggt cttccgacta tgcccttaag ttgtggctta
     6541 ccacttgtta ttgaacagtt ttttctaaaa tgtggatggg gagtagatgc tgtactcccc
     6601 tctccttagc ttttacatct ggtacccagc ctcattcgca tacagcacat aaagtacaaa
     6661 aacgtctata tcttgtagcc agcattggat tggatcagta agtggttttc ttaattaaaa
     6721 aattaagaaa acaaaagact accaacccta actccctgag ttgaaatagc ttctttgagc
     6781 tggacagatg acatgagtaa aaagcatgag tgccacaagc atgaagatct gagtttgaat
     6841 ccccagcacc tacgtacagg tgggtacagt agtgtgcatc taagcccagt gctcctacag
     6901 aaagataggc agaggtagtt tccagaagcc ctttgagtag ctaacctggc atattcagtg
     6961 ctgaatccct ttctcaaagg tcgaaggtga ggactagcac cggaagttgc catctgacct
     7021 gcaccctagc acatatgccc tcacatacat gcaaacatac agacctccac acatgcaccc
     7081 tggcatacat gccatcacat acaacttgtg agtgtataca ccacgcatgt gacctcaaaa
     7141 catgcaagtg gatatgccaa ttttgcctcc ttgctaatta tctgctgaaa gatgtttaag
     7201 atttttaaag tatcaaagtt ggatcataaa cccaacttca atgttaactt ctttctccca
     7261 gttaatactt ccttgataaa gcaataacgc tgctttgagt ctgttgccta gtaaatagca
     7321 tgtcataatc ctgctggatg gtgattttat aggaaagttt gtatgcatat cacccaatct
     7381 atcttttaaa aaaagtaaaa aatttaaatg tatgctggaa gtaatgacaa tatattgtgg
     7441 cattttattt taaaaaaatt ggggaaagtt gcatattttt ttaaaagtag ctgtttgagt
     7501 aaaaaaactg aaggtacttt tttaaggaaa aaatttatat gccacagttt acatagacat
     7561 ttccaatttc agcatttact ctcggatata ctggcttctt tacttggata aatgcatgtt
     7621 ttccttggtc aaaagtgcat cactctgaac ttagttactt atgtttcctt acagtaccct
     7681 ttatatattt ttattgtatc tagaagcaaa attatcttta aaaaaataag ttgggcatat
     7741 ttgtcaaact acagaatgta tagaatcaag gctatccctt ttctagcaag tgttacttaa
     7801 aactgaaaac gatactgtgt tacagtcaag agattcctat gaaggcacaa aggtgatttt
     7861 ctaagtgtca catactccat tcatttgtgg cctaaatttc atgttgagaa tgcctgcttc
     7921 tgctctgaac aatgtgggca tttactctgt tttacagcag tgaaacatgg atgtgagcct
     7981 acggtgcaag gtgtgcgcaa ttggaaacct gttgattttt ctatgtggac atatctacac
     8041 acaagggtta aactcacagc cttactagtt ccttgcttcc agtatttcaa ctggtctccc
     8101 ctcattacta ctatttttgc acatagttaa actacccttc agaatgattc ttaaaaagtg
     8161 ctgtttctgt ggtattgtat tctctaaatg atcatattta attttttaaa caaggttaca
     8221 atttctaatt gttctgttcc tgtgtttttt gctgcgtgta ataaaagcaa gtttttcttt
     8281 ttatggttat ttaatacatt agctgcctgt aaataattct tgttacaatg ctctggaatg
     8341 tgttgtagaa gttgtactag attagtttga agccttgttt aaaaaccaca ttgttttggc
     8401 tatttctatt aaattagaaa attgcaaaag tttt
//
