LOCUS       NM_001106376            2451 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus tripartite motif-containing 31 (Trim31), mRNA.
ACCESSION   NM_001106376 XM_001075715 XM_227942
VERSION     NM_001106376.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2451)
  AUTHORS   Uchil PD, Hinz A, Siegel S, Coenen-Stass A, Pertel T, Luban J and
            Mothes W.
  TITLE     TRIM protein-mediated regulation of inflammatory and innate immune
            signaling and its association with antiretroviral activity
  JOURNAL   J Virol 87 (1), 257-272 (2013)
   PUBMED   23077300
REFERENCE   2  (bases 1 to 2451)
  AUTHORS   Uchil PD, Quinlan BD, Chan WT, Luna JM and Mothes W.
  TITLE     TRIM E3 ligases interfere with early and late stages of the
            retroviral life cycle
  JOURNAL   PLoS Pathog 4 (2), e16 (2008)
   PUBMED   18248090
REFERENCE   3  (bases 1 to 2451)
  AUTHORS   Hurt P, Walter L, Sudbrak R, Klages S, Muller I, Shiina T, Inoko H,
            Lehrach H, Gunther E, Reinhardt R and Himmelbauer H.
  TITLE     The genomic sequence and comparative analysis of the rat major
            histocompatibility complex
  JOURNAL   Genome Res 14 (4), 631-639 (2004)
   PUBMED   15060004
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from BX883051.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_227942.3, XM_001075715.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-646               BX883051.1         283110-283755
            647-742             BX883051.1         285183-285278
            743-973             BX883051.1         287038-287268
            974-996             BX883051.1         292020-292042
            997-1112            BX883051.1         292478-292593
            1113-1187           BX883051.1         293674-293748
            1188-1229           BX883051.1         294192-294233
            1230-2451           BX883051.1         295212-296433
FEATURES             Location/Qualifiers
     source          1..2451
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..2451
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /note="tripartite motif-containing 31"
                     /db_xref="GeneID:294208"
                     /db_xref="RGD:1308607"
     exon            1..646
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     CDS             233..1756
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif protein 31"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM31"
                     /protein_id="NP_001099846.1"
                     /db_xref="GeneID:294208"
                     /db_xref="RGD:1308607"
                     /translation="MADPKMASQLQEDVTCPICLEILQDPVTIDCGHNFCLKCINQIG
                     KTSENILCPLCKCSVSKNTFRPNKLLASLAEKIQTMDPADIQQEKEEARCQKHKKKLY
                     YFCEQDGALLCVVCRDSKDHKFHDVTLIDEAVQNYKVQIESQAQDLGRKDKEIIEEKK
                     RGEGAIWTFRAQVELEKLKVIEEFKHLRQRLDEEESFLLSRMDWLEKQGAKQLGQYVT
                     VTEKQLNSLRTLTKSLKIRLQSSSIELLKDIKDTLSRNKEFQFLSPIPVPVDLEKKRS
                     EAKARLESVLKSLTEFKDNLKAKGKKDKSEFVSSLNKEERESWSLLQKNNSMSPTPVP
                     MTLDKDSADPDLTISHDGKKVTLYYIAGKASNKQAKPRPFYPFHCVRGSPGLSSGRRV
                     WEAEIWEPSGGACIIGVATELAQGSQSQNIRMQNCIWALRISPTGCQPFTNCKTQEHL
                     QVCLKKVGVYVNHDCGEVIFYDAITSKHIYTFQTSFNGRVFPLFGLQVTCSHITLTP"
     exon            647..742
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     exon            743..973
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     exon            974..996
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     exon            997..1112
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     exon            1113..1187
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     exon            1188..1229
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
     exon            1230..2451
                     /gene="Trim31"
                     /gene_synonym="Trim31l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagtgaggga gggcttaccg tctgttttct tctctttaga atattcccca tttaggtctg
       61 actcttttct gtcattattg acttaacccc ctctcttccc gtgtcctcct ctaatcctcc
      121 cattgagaga ctcttcaacc tccgtctcct gttttccgtc tcccttccca gcaccagtgt
      181 ctgccttgga tttctgggct ttcacatctc agattagccc tgctgctctg tcatggcaga
      241 cccaaagatg gccagccaac tgcaggagga tgtgacctgc cccatctgct tggaaattct
      301 acaagatcct gtcaccattg actgtgggca caacttctgc ctgaagtgta tcaatcagat
      361 tgggaaaacg tcagaaaata tcctatgtcc tctctgcaag tgctctgtga gtaagaatac
      421 tttcaggccc aataagctgc tggctagtct tgcagagaag atccagacta tggatcctgc
      481 tgacatccaa caagaaaagg aagaggcaag atgtcagaag cacaagaaaa agctatatta
      541 cttctgcgag caggatgggg cgctcctctg cgtagtgtgt cgtgactcca aggaccacaa
      601 attccacgat gtcaccttga tagatgaggc tgtccagaac tacaaggtgc agattgagtc
      661 acaggcccag gatttggggc gaaaggacaa ggaaataatt gaagagaaaa aacgaggcga
      721 aggggcaatc tggacattca gggcccaggt ggaactagag aaactaaagg tcattgagga
      781 attcaagcac ctgcgccaga gactggacga ggaagaaagt ttcctcctgt ccaggatgga
      841 ctggctggag aagcagggag ccaagcagtt gggacaatat gtcactgtga cagagaagca
      901 gctgaactct cttaggacgc tcactaaatc cttgaaaatt agactgcaat cttcatccat
      961 agagttacta aaggacatta aagacaccct gagcaggaat aaggaatttc agtttctcag
     1021 cccaattcca gttcctgtgg acctggagaa aaaacgcagt gaagcaaaag caagacttga
     1081 gtccgtccta aaatccctga cagaattcaa agacaacctg aaggccaaag ggaagaaaga
     1141 taaaagcgag ttcgtgagca gcctgaataa agaagaaagg gagagctgga gcctattaca
     1201 gaagaataac tcgatgtcgc ccaccccagt ccccatgacc ctggacaagg actcagctga
     1261 cccagacctc accatttctc atgatggaaa gaaagtgacc ttgtattata tagctggaaa
     1321 agcttccaat aagcaggcaa agcctcgacc attctaccca ttccactgtg tgaggggttc
     1381 cccaggcctc tcctcaggcc gccgggtgtg ggaggcagaa atctgggagc cctcaggtgg
     1441 ggcatgcatc attggcgtgg ctacagagtt ggctcaaggg tcccagagtc aaaacatcag
     1501 gatgcagaac tgcatatggg cactgcggat ctcacccact ggatgccagc cattcaccaa
     1561 ttgtaaaacg caggagcatc tccaggtctg tctcaagaaa gtgggtgtct acgtgaatca
     1621 tgactgcggg gaggtcatct tctatgatgc catcactagc aaacacatct atactttcca
     1681 aacttctttt aacgggaggg tcttccccct tttcgggctc caagttacct gcagccatat
     1741 caccctgacc ccttagggct gctcgcttgt gggtgcctag gtctcttccc tacctatccc
     1801 tcagcatggg atgagacaaa gtggtaggag tgaagcatgg ccctactcca gcactctaca
     1861 cacctatgca cacctgatgt atcctctccc ctccacccct gagtagagaa gacagtggaa
     1921 tactcccaaa ggctagacac aagatttttc accactgcac ttggtagcag gaactctggc
     1981 catgctctgc tgagacacgg gtgcaaggcg ctgtccagca ccctggctgc tttctccact
     2041 ttactactca aagctcccat gactctaaat ttgagcactt gactctcatc ctttcctgag
     2101 atcggagaac cagaggctgt gtagagtcag tcagttctgt gccaattccc agtttgtaga
     2161 cggggatagt ctacaatcag ggatgcaacc ttttgatatt tcaaagcaac attgtcattc
     2221 tcagcagctc tgtcttccaa ttgaaaacaa aattgtgggg gctggaggga tggctcagtg
     2281 gttaagggca ctgactgctc ttccagaggt cctgagttca attcccagca accacatggt
     2341 ggctcacgac catctgtact gagatctgat gccctcttct ggtgtgtctg aagatagcta
     2401 tagtgtactt atattaataa aagttaaaaa aaaacaaaat tgtaaatcac c
//
