LOCUS       XM_039101117            3960 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif-containing 30D
            (Trim30d), transcript variant X2, mRNA.
ACCESSION   XM_039101117
VERSION     XM_039101117.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101117.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3960
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3960
                     /gene="Trim30d"
                     /note="tripartite motif-containing 30D; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 11 ESTs, 12 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     43 samples with support for all annotated introns"
                     /db_xref="GeneID:499223"
                     /db_xref="RGD:1563970"
     CDS             467..1954
                     /gene="Trim30d"
                     /codon_start=1
                     /product="tripartite motif-containing protein 30A-like
                     isoform X1"
                     /protein_id="XP_038957045.1"
                     /db_xref="GeneID:499223"
                     /db_xref="RGD:1563970"
                     /translation="MASSVLEMIKEEVTCPICLELLKEPVSTDCNHSFCRACITINYE
                     SNRNTEGEGSCPVCRVCYLFRNLRPNRHVANIVERLKGFKSIPEEEQKVNVCAQHGEK
                     LQLFCKKDKMAICWLCERSQEHHGHKTALVEEVDHEYKEKLQDALQKLMEKEKTCDEW
                     QDVIQQQRTYWENQIQSDIKNVQIEINGLRELLDSKENEELQELKKEKEDVFQRLEES
                     ENELVQQRESVRDCISDVEHQLELSTMEMLQSVEYVLRRSQTLKLKLPDIISERRRKF
                     QAPDLKGMLQAFEGLMDIQRYWVHVTPCQYNKEIVSINKNKGQIQCASHYRRNRQVSE
                     TFHLGVVGYPAIQSGKHYWEVDVSTCDAWLLGLSDGKCAQPHLMGEMGFKMKLNSNFN
                     QIEMYQPKCGYWVIGMKDRSVYNAFDECSITHNPSVLVLCLPHAPSRVGVFVDREACT
                     LSFYDVSNSGALIYRFYYPSFPHRVFPYFNPLECLKPMTVCGPPS"
ORIGIN      
        1 attttctcag ttccaaccct caaagtctta actttcattt ctctactggc tcaccagagg
       61 accggagtag ttgactgaat tctcaggact tagactctgc cccgggtttg ctcctttcca
      121 cagattcagg gtcacttggt tgagatatgg aggtgtgagt tagttttcga ctgcaagttt
      181 ggaggaattt agaagacaac actctttgct ctgctgctgg cattacaggt gaacattact
      241 gccccagaag aaacaacgag agctcctaat ggaatttagt gacataaaag actgaaagat
      301 gtctgctgat aaaaagatct agagagcttg agaaccatga aagtaaagaa aggacttgga
      361 gcagggaatc caggcttcac acaagctaat gtggacacct gaatacacag gcaccagtgc
      421 agaagtgtga ggagtcaaga cagacagaca caggatcaca gcaactatgg cctcatcagt
      481 cctggaaatg ataaaggagg aggtgacctg tcctatctgt ctggagctcc tgaaggaacc
      541 cgtgagtact gattgcaacc atagcttctg cagagcctgc atcacaataa actatgagtc
      601 caacaggaac acagaagggg agggcagctg ccccgtgtgc cgagtgtgtt acctgtttag
      661 aaacttaagg cctaatcgac atgtggccaa catagtggag agactcaagg ggttcaagtc
      721 catcccagag gaagaacaga aggtgaatgt ctgtgcacaa catggagaga aactccagct
      781 cttctgtaag aaggacaaga tggccatctg ctggctttgt gagcgatctc aagagcacca
      841 tggtcacaag acagctctgg ttgaagaggt ggaccatgag tacaaggaga agctgcagga
      901 tgctctgcaa aagctgatgg aaaaagagaa aacatgtgat gaatggcagg atgtcattca
      961 acagcagaga acttactggg agaaccaaat acagagtgat ataaaaaatg ttcaaataga
     1021 gattaacggg ctaagagagc tcctggactc caaggagaat gaagagctgc aggagctgaa
     1081 gaaagagaaa gaagatgttt ttcaaaggct ggaagagtct gaaaatgagc tggtgcagca
     1141 gagggagtcc gtgagagact gcatctcaga tgtagaacat cagttggagc tctcaactat
     1201 ggaaatgctc cagagtgtgg aatatgtcct gagaaggagt cagaccttga aactgaaact
     1261 gccggatatt atctcagaaa gaagaagaaa gttccaagct ccagatttga aaggcatgct
     1321 gcaagcattt gaagggctca tggatatcca gcgatactgg gttcatgtaa ctccatgtca
     1381 atataacaag gaaatcgttt ccattaacaa aaataaagga caaatacaat gtgcaagtca
     1441 ctataggagg aatcgtcaag tttctgagac tttccattta ggcgtcgtgg gatatccagc
     1501 tattcagtca gggaagcact actgggaagt agacgtgtct acatgtgatg cctggctcct
     1561 tggattaagt gatggaaaat gtgctcaacc ccatttaatg ggtgaaatgg gcttcaaaat
     1621 gaaacttaat tctaatttta accaaattga aatgtatcag cctaaatgtg gctactgggt
     1681 tatagggatg aaggataggt ctgtatacaa tgcctttgat gagtgctcta tcacccacaa
     1741 tcctagtgtc ttggttctct gtctgcctca tgctcccagt cgtgttggag ttttcgtgga
     1801 ccgggaagct tgcactctct cattttatga tgtttctaac tcaggagctc tcatctatag
     1861 gttctattac ccttccttcc ctcatagagt ctttccatat tttaatcctt tggaatgttt
     1921 gaagccaatg acagtatgtg gaccaccctc ttaagctctc acctacatct acgcagtgcc
     1981 ccaatgtgtg gtgtatccca tgtaccagag cttccctgca tcattttaat ttttttgtct
     2041 tgggttcttt attttaatga ccttcacgta taactacaaa ccagcatgga ttaattccct
     2101 tgatccacct gcttctctac tcacaagatg attactgcca tttgtcattt cccatattcc
     2161 caaagaaaat gattatttcc tcactaagtg aaatcgagcc tctgttaaga ccatctctgt
     2221 agcatcacag tcaaaagaat gactcatagc caacaatgtc ttagagaact tgagagaggc
     2281 cccagaaaaa aaaaaaacag aggacctttt acctcaagta cattttgttt cctggattgg
     2341 cttggatgtg attttgtacc tcctgcaaca aacatttgca ttcaacttac tcgatgtgtt
     2401 ttctcttgtt ggatgtcaga acatagctac agaatccatc cttgtgaaag gatatgctaa
     2461 gtgctggcct caatgcacac tgattctaga catgggctgt gctttgcttc cctgattccc
     2521 cagatataat ctatagtata gtgcagacaa tcgtgtttaa attcatctgt cctgagaaag
     2581 ttgtgtgaaa gggttgctct gttactattt actatatgct tactggcatt tatttacatg
     2641 tttttatgat tctctttctc caaactcaaa gaacctttct taaattgttg ctttccattg
     2701 tacattcatg tctaaaagca cagtgaaact gaagtaaaga tgtctgctga agtccctcta
     2761 tcctagactg tcttcaaacc ccaggtctta cagacagaac tatctcggtc cacaaaggta
     2821 gatacacctt actttttgtg gtgccagaga tacaagccag ggcttcatgt atgcttatgg
     2881 gttgctctac cactgagttg cttacctgag ctctatcact tctccacaaa cgtattattt
     2941 ttgtcactga caatagatga aagttctttt ccagcttgtc tagcagttta gaaaattata
     3001 tataggagtc tctgactaag gaatggaccc ttagcaggag gtcagtttaa ccacaatgct
     3061 tgtgtttcat caaaaagtta agaaggaaat ctctcaaatg atactcagta agaccatgtg
     3121 tttagagtat ccaggttcta atccaagctc ctcacattgc aatgcaaccc tgaataacat
     3181 cctcttgagc ttgcatttgc tcgttttctt ttccttttgt ttcatttttc tggttttgtt
     3241 tttcagtttt ggtataaata gtgtgcctat attgcaggtc attgcaggtc ttaaatttga
     3301 aatctttaga aggctctgag ggtcaaagtc ctttcaccta tgagaaacga actgagttcg
     3361 tttactcaga ccctcctggc tgaaggaggc aaacagctcc gatagatttt cctctcagca
     3421 cacaaatatg ttacagaaca caaaggatga agcacatgca aaatgaaagg ggattaggta
     3481 atttttagta agagaagttc aatacttata ctgcaacccc tgcacattca gtgggtggtg
     3541 tttgtgctga ttactgagaa gatgtactgt actgatgttc tatggcacag tgtgtgatgg
     3601 ggaaactaag ttacagctct tcttgtgtct tggtgttaga tcctgggaat tgccaccaag
     3661 attactctaa tatgttgtgg atatctattt ttggttggtt ttacacttat tttttgagag
     3721 gatatttgtc ttgctgtatt cattattaaa taagttaaat tctatgattt tccattttat
     3781 aatgaatgat aatgatgaca atgatacaca tcactgtgcc ttctgttatg ttgtgaaatg
     3841 taaacaatag attttttcta ggaactcata ttccttccag catgtaagaa ttattgaata
     3901 tggtgtctat ttttcctccc gtttgatgtg accataataa agtatcattg gaatgacaaa
//
