LOCUS       XM_006229915            2650 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tripartite motif-containing 30C
            (Trim30c), transcript variant X1, mRNA.
ACCESSION   XM_006229915
VERSION     XM_006229915.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006229915.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006229915.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2650
                     /gene="Trim30c"
                     /note="tripartite motif-containing 30C; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 19 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:102554102"
                     /db_xref="RGD:1566132"
     CDS             999..2543
                     /gene="Trim30c"
                     /codon_start=1
                     /product="tripartite motif-containing protein 30A"
                     /protein_id="XP_006229977.1"
                     /db_xref="GeneID:102554102"
                     /db_xref="RGD:1566132"
                     /translation="MASSVLEMIKEEVTCPLCLELLKEPVSADCNHSFCRACITPNYE
                     SNRNTEGQGSCPVCRVRYLFRNLRPNQHVAKIVESLKGFKSIPEKEQKVNVCAQHGEK
                     LQLFCTKEMRAICWVCERSQDHRGHQTALIEELDHEYKRKLQDALQKLMEKEKTCDEW
                     QENVQQQRTYWETQIQSDVEYIQKEFKLLRELLDSKENEKLQELKKEKEDVVKRLERS
                     ENELVQRRQRVRDLISYMQHQLKFSTMDMQQDVNSLLRSYVKAIERNSPIVRSQTLKL
                     KQPQTIPKRRRRMFQAQDMKGMLQAYLGLMDLRRYWVHMNLHANNHAVIAVNKEKRQI
                     QHTSYYKRNLQISEIYNLSVLGYPAIHSGKHYWEVDVSRKNAWLLGVNDGLCAQPQLH
                     SITEMSFSAKYNSCVEQHGNYQPKYGYWVIGMKNRSASDECFVSHNSSVSTLSLPCPP
                     TRVGVFLDREACTLSFYDVSNFGGLIYRFHNPFFPDTLYPYFNPMECSEPMTVCRPPS
                     SNSVGR"
ORIGIN      
        1 atcattaaac tgcaagatat cctccttaga caaagaggca acagtcttcc agggacatgt
       61 tctttctttg aaaaggtcaa gcccttctca ggaatctgct cagggcaggg cactagcttt
      121 gcttagtccg gcagtccagt ccccaacatg tgaaaggact aggtctgttc agccacagag
      181 tacataatct ggagagacca tggggcagct agagagccct ctgcagctca cgaccctgtg
      241 cactgctagt gtggtgaggt gtttctgctc gctctgcaca tgactcctcc ccatcctgcc
      301 cctgccgagt ggcaaaatct tactggtgtg gtcttccctg aactacaact ccttcctgtt
      361 ctcatcctgt aagaggccag ctccaacctc agaggagctg agctttccac tgcagctttc
      421 tgtccctagc cttgtttttc cttccctttg ggccacacca aagcaaaacc cagccaggag
      481 ctaaggaaca ggagaaacca tagggaaggc tttctgttca tcacaggcag atttccaaag
      541 ggtcaggaac tttttgggtg attttatcct gagtcagaac aagggacata actagttcct
      601 gtagctctga aaaatgcccc acgctcctgg aaggcagagc tgacccaagg cagttgactc
      661 tctctggtgg tacaacccca gttcatgatg tggaaccatc ctgttgcttg atagttctgt
      721 ggtttccttt tctcagttcc aaccctcaaa gtcttagctt tcatttctct cctgactcac
      781 cagcggacca gcttagcgac taaattctca gggcatagac tttggcctga gtttgcttct
      841 ttccacaaat tctgtgtcac ttggttggtg tctgaaggtg tgagaacaat tttagactgc
      901 agagtcttga agaatttaga agaaaaccct gtctctgcct agggatctag acagaagtgt
      961 gaggagtcaa aacagacaga cacaggatca cagcaactat ggcctcatct gtcctggaga
     1021 tgataaagga ggaggtgacc tgtcctctct gtctagagct cctgaaggaa cccgtgagtg
     1081 ctgattgcaa ccatagcttc tgcagagcct gcatcactcc gaactatgag tccaacagaa
     1141 acacagaagg gcagggcagc tgccctgtgt gccgagttcg ttacctgttt aggaacctga
     1201 ggcctaatca acatgtggcc aagatagttg agagtctcaa ggggttcaag tccattccag
     1261 agaaggagca aaaggtgaat gtttgtgcac aacatggaga gaaactccag ctcttctgta
     1321 cgaaggagat gagagccatc tgttgggttt gtgagagatc tcaggaccac cgtggtcacc
     1381 agacagctct cattgaagag ctggaccatg agtacaagag gaagctgcag gatgctctgc
     1441 aaaagctgat ggaaaaagag aaaacatgtg atgaatggca agagaacgtt caacagcaga
     1501 gaacttactg ggagactcaa atacagagtg atgtagaata tattcagaag gagtttaaat
     1561 tactaagaga gcttctggac tccaaggaga atgaaaagct gcaggagttg aagaaagaga
     1621 aggaagatgt tgtgaaaagg ttggaaaggt ctgaaaatga gctggtgcag aggaggcagc
     1681 gggtgagaga cctcatctca tatatgcagc atcagttgaa gttctcaacc atggacatgc
     1741 agcaggatgt gaattctctt ctaagaagtt atgtcaaggc aatagaaagg aatagcccca
     1801 ttgtgcggag tcagaccttg aaactgaaac agccgcaaac tatcccaaaa agaagaagaa
     1861 gaatgttcca agctcaggat atgaaaggca tgctgcaagc atatctaggg ctcatggatc
     1921 tccggcgata ctgggttcat atgaatctac atgcaaacaa ccatgcagtc attgccgtta
     1981 acaaagaaaa aagacaaata caacatacaa gttactataa aaggaattta caaatttctg
     2041 agatctataa cttgagtgtc ctgggatacc cagctatcca ctcaggaaaa cattactggg
     2101 aagtagatgt gtctagaaaa aatgcctggc tcctgggagt aaatgatgga ctgtgtgctc
     2161 aacctcaact tcattctata actgaaatga gcttcagtgc caaatataat tcttgtgttg
     2221 aacaacatgg aaattatcag ccgaaatatg gctactgggt tataggaatg aagaataggt
     2281 cagcctctga tgagtgtttt gtttctcata attccagtgt ctcgactctc tctctgcctt
     2341 gtcctcccac tcgtgttgga gttttcctgg accgggaagc ttgcactctc tcattttatg
     2401 atgtttctaa ctttggaggt cttatctata ggttccataa ccctttcttc cctgatacac
     2461 tctatccata ttttaatcct atggaatgtt cagagccaat gacagtatgt aggccacctt
     2521 cttcaaactc tgtaggaaga tagataaaag aatgacccat attcctcaga aaattggaca
     2581 ttgaactgcc tgaggatcca gctatacctc tcttgggcat atacccaaaa gatgccccca
     2641 acatatacaa
//
