LOCUS       NM_001106815            2832 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 29 (Trim29), mRNA.
ACCESSION   NM_001106815 XM_001066075 XM_236207
VERSION     NM_001106815.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Yuan,Z., Villagra,A., Peng,L., Coppola,D., Glozak,M.,
            Sotomayor,E.M., Chen,J., Lane,W.S. and Seto,E.
  TITLE     The ATDC (TRIM29) protein binds p53 and antagonizes p53-mediated
            functions
  JOURNAL   Mol Cell Biol 30 (12), 3004-3015 (2010)
   PUBMED   20368352
REFERENCE   3  (bases 1 to 2832)
  AUTHORS   Reymond,A., Meroni,G., Fantozzi,A., Merla,G., Cairo,S., Luzi,L.,
            Riganelli,D., Zanaria,E., Messali,S., Cainarca,S., Guffanti,A.,
            Minucci,S., Pelicci,P.G. and Ballabio,A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J 20 (9), 2140-2151 (2001)
   PUBMED   11331580
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473975.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_236207.4, XM_001066075.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760389,
                              SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..2832
                     /gene="Trim29"
                     /note="tripartite motif-containing 29"
                     /db_xref="GeneID:300656"
                     /db_xref="RGD:1307858"
     exon            1..922
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     CDS             119..1882
                     /gene="Trim29"
                     /note="tripartite motif protein 29"
                     /codon_start=1
                     /product="tripartite motif-containing protein 29"
                     /protein_id="NP_001100285.1"
                     /db_xref="GeneID:300656"
                     /db_xref="RGD:1307858"
                     /translation="MEGADASRSNGASPEARDARSPPGPNGSLENGTKADSKDTKTTN
                     GHSGEVTEGKTLGSALKSGEGKSGLFSSNEWRRPIIQFVESVDDKGSSYFSMDSAEGR
                     RSPYAGLQLGASKKPPVTFAEKGELRKSIFSEPRKPTVTIVEPGEARRNSYPRADSSL
                     LLRSKSGSEEVLCDSCIGNKQKAVKSCLVCQASFCDLHLKPHLEGAAFRDHQLLEPIR
                     DFEARKCPLHGKTMELFCQTDQTCICYLCMFQEHKNHSTVTVEEAKAEKETELSLQKE
                     QLQLKIIEIEDEAEKWQKEKDRIKSFTTNEKAILEQNFRDLVRDLEKQKEEVRAALEQ
                     REQDAVDQVKVIVDALDERAKVLHEDKQTREQLHSISDSVLFLQEFGALMSNYSLPPP
                     LPTYHVLLEGEGLGQSLGNCKDDLLNVCMRHVEKMCKADLSRNFIERNHMENGGDHRY
                     MNNYTSSYGNEWSTPDTMKRYSMYLTPKGGGRTSYQPSSPNRLSKETNLKNFNNLYGT
                     KGNYTSRVWEYSSTVQNADDMPTVQGNSSFSLKGYPSLLRSQVPKAQPQTWKSGKQTL
                     LSHYRPFYVNKGSGIGSNEAP"
     exon            923..1018
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1019..1252
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1253..1451
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1452..1553
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1554..1646
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..1742
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1819
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..2832
                     /gene="Trim29"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcccacagg tgtgtccctg ggctcttgct gctagcccca ctccgtgcct gagacaccca
       61 ctgaagtcac cagccacaag accccaacca gcagaaacag gctagcaagt gacctgccat
      121 ggaaggtgcc gatgcctcca ggagcaatgg ggccagcccg gaagccaggg acgctcgcag
      181 cccaccgggt cccaacggca gcctagagaa tggcactaaa gcagacagta aggacaccaa
      241 gacaaccaac gggcacagtg gggaggtgac agagggcaag accctgggca gtgccctgaa
      301 gtcaggggag gggaagagtg gcctattttc cagcaacgag tggcgcaggc ctattattca
      361 attcgtggag tcagtagacg acaaaggctc cagttacttc agcatggact ctgcggaagg
      421 caggaggtcc ccttatgcgg ggctccagtt gggggcttcc aagaaacctc ctgtgacctt
      481 tgctgagaag ggggagctgc gaaagtccat cttctccgag ccccgcaaac ccacggtgac
      541 tatcgtggag ccgggggagg cccgcaggaa cagctacccc agagctgact ccagcctcct
      601 gctgcggtct aagtcgggct ctgaggaggt gctgtgcgac tcctgcatcg gcaacaagca
      661 gaaggctgtc aagtcctgcc tggtgtgcca ggcttccttc tgtgacctgc atctgaagcc
      721 ccacctggag ggcgctgcct tccgtgacca tcagttactc gagcccatcc gggatttcga
      781 ggcccgaaaa tgtcccctgc acggcaagac catggagctc ttctgccaga ccgaccagac
      841 ctgcatctgc tatctctgta tgttccagga gcacaagaac catagcactg tgacggtgga
      901 ggaggccaag gccgagaaag agactgagct gtcactgcaa aaggagcagc tgcagctgaa
      961 gatcattgag attgaagacg aagctgagaa gtggcaaaag gagaaagacc ggatcaagag
     1021 ctttaccacc aacgagaagg ctatcctgga gcagaacttc cgggacctgg tgagggacct
     1081 ggagaagcag aaggaggaag taagggctgc actggagcag cgggagcagg acgctgtgga
     1141 ccaagtgaag gtgatcgtgg atgctctgga tgagagggcc aaggtgctgc acgaggacaa
     1201 gcagacccga gagcagctgc acagcatcag tgactcggtg ctgtttctgc aggaatttgg
     1261 tgcgttgatg agcaattact ctctccctcc acctctgccc acctaccacg tcctgctgga
     1321 gggagaaggg ctgggacagt cactcggcaa ctgcaaggat gacttgctca atgtgtgcat
     1381 gcgtcatgtt gagaagatgt gcaaggccga tttgagccgc aacttcatcg agaggaacca
     1441 tatggaaaac ggcggtgacc atcgctacat gaacaactac acaagcagct atgggaacga
     1501 atggagcaca ccagacacca tgaagagata ctccatgtac ctcacgccca agggtggggg
     1561 ccggacatcc taccagccgt cctcgcccaa ccgcctctcc aaggaaacca acctgaagaa
     1621 tttcaacaat ctgtatggca caaaaggtaa ctatacttcc agggtctggg agtactcgtc
     1681 cactgttcag aacgccgatg acatgcccac tgtgcaaggc aactcctcct tctccctgaa
     1741 aggctatccc tccctcctcc ggagccaggt ccccaaggcc cagcctcaga cttggaaatc
     1801 tggcaagcag actctactgt ctcactaccg gccattctat gtcaacaaag gcagcggcat
     1861 cggatccaat gaggcaccct gagttcagca cagaggagct ccattacccc accctcccat
     1921 tgctcctgct ttccaagctg ctgcgcttcc gcacgggcag gaacccagcc ccactctgcc
     1981 ctctcacagc ctctgacagc cttaccaggg taccctagct tcctctgctc cttttctgct
     2041 tggtgacata cagccgctgt gacttctatg tgcgaggcca agttacctac catcgaggcc
     2101 cgagacagct gggttctgtt ctcatagacc aggcccacat agtgccagtc tgtctgtcca
     2161 cctgccgagg ctccgccatg tcgggcttgg tgaccgtttc cttccaccag gcgcctaatt
     2221 agggcagcct cttcactccc atccctttgg ctcacgttgt atcggcagcc cgagcctgtc
     2281 agaagacagg tcctgtgtgt cctctgcatc ccccttacta cagcatggct ggccttgacc
     2341 atgccttagg ggatgctctc agtatcctgg ctttttccca gtctagccga gaggctctgc
     2401 catgtgctct tcgaggctgc aaagccagag aataggctat cctgtctggc gagaggattg
     2461 cagcctagac atttctcccc cattgcttgg aagagcagtt ccccggatgt gccacaatcc
     2521 actcatgaag atttgcccgt agacttgcac taatgtggga atttggtgct ctttgaggta
     2581 atggccagca ggagggctgg gaagagtggt gtcacttaag aggtaccacc cggattggga
     2641 gagtcggcct ccatccatgt cacatgtcac cgggcttgga gagggccaaa tcaggaacaa
     2701 cactgagtgc tgggagcttg tctcccactc caggctgatg ggggctcatg ggtcagcttg
     2761 caggggtggg gaggggtact tttggcttgg gcttccccct ccctgaataa accatttgtc
     2821 tctttattct ct
//
