LOCUS       NM_022798               1703 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 17 (Trim17), mRNA.
ACCESSION   NM_022798
VERSION     NM_022798.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Mandell,M.A., Jain,A., Arko-Mensah,J., Chauhan,S., Kimura,T.,
            Dinkins,C., Silvestri,G., Munch,J., Kirchhoff,F., Simonsen,A.,
            Wei,Y., Levine,B., Johansen,T. and Deretic,V.
  TITLE     TRIM proteins regulate autophagy and can target autophagic
            substrates by direct recognition
  JOURNAL   Dev Cell 30 (4), 394-409 (2014)
   PUBMED   25127057
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Urano,T., Usui,T., Takeda,S., Ikeda,K., Okada,A., Ishida,Y.,
            Iwayanagi,T., Otomo,J., Ouchi,Y. and Inoue,S.
  TITLE     TRIM44 interacts with and stabilizes terf, a TRIM ubiquitin E3
            ligase
  JOURNAL   Biochem Biophys Res Commun 383 (2), 263-268 (2009)
   PUBMED   19358823
REFERENCE   3  (bases 1 to 1703)
  AUTHORS   Ogawa,S., Goto,W., Orimo,A., Hosoi,T., Ouchi,Y., Muramatsu,M. and
            Inoue,S.
  TITLE     Molecular cloning of a novel RING finger-B box-coiled coil (RBCC)
            protein, terf, expressed in the testis
  JOURNAL   Biochem Biophys Res Commun 251 (2), 515-519 (1998)
   PUBMED   9792805
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078819.1.
            
            On Apr 20, 2007 this sequence version replaced NM_022798.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078819.1, AF156272.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..1703
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /note="tripartite motif-containing 17"
                     /db_xref="GeneID:64702"
                     /db_xref="RGD:69290"
     exon            1..52
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
     exon            53..486
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
     CDS             58..1491
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif protein 17; testis RING finger
                     protein; tripartite motif-containing protein 17; RING
                     finger protein terf; ring finger protein 16; RING-type E3
                     ubiquitin transferase TRIM17"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM17"
                     /protein_id="NP_073635.1"
                     /db_xref="GeneID:64702"
                     /db_xref="RGD:69290"
                     /translation="MDAVELARRLQEEATCSICLDYFTDPVMTACGHNFCRECIQMSW
                     EKGKGKKGKKKQKGSFPCPECREMSPQRNLRPNRLLTKVAEMARQHPGLHKRDLCQIH
                     QEPLKLFCQDDQTPICVVCREAQEHRMHRVLPLDEAAREYKLRLEEDIKYLREEMMKT
                     ETLQAKEEQTLTEWQERVKERRERILEEFQKVVLFLVEEERRLLQILKKEEDDTLGKL
                     QDSKASLDHQSRSLDLILLQLEEQTQQEPLQMLQDVKDTLTRKESLSMQYPEVVLPVA
                     IKTVCRVPGQIEVLKSFQEDVVPDPSTAYPYLLLYESRQRRYLSPPPEGSAPYSKDRF
                     LAYPCAVGQKSFSSGRHYWEVGMNLTGDALWALGVCRDNVSRKDRVLKSPENGFWVVQ
                     LSKGKKHLPLLPNSIPVTLTEPPSHMGIFLDFQAGEVSFYSVNDGSHLHSFSQVAFPG
                     PLLPFFCLGSPKSGQMVISTVTMWVKG"
     exon            487..582
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
     exon            583..813
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
     exon            814..836
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
     exon            837..940
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1675
                     /gene="Trim17"
                     /gene_synonym="Rnf16"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccacgctgcg cacttggccc tggcacccag cgcagtgcaa ggctccttcc ttgagccatg
       61 gatgctgtgg aacttgccag acggttgcaa gaagaggcca catgttccat ctgcctcgac
      121 tactttactg accctgtgat gactgcctgt ggccacaact tctgcagaga gtgcatccag
      181 atgagctggg agaaggggaa gggcaagaaa gggaagaaga agcagaaggg ctccttcccc
      241 tgccctgagt gcagggagat gtcccctcag aggaacctga ggcccaaccg cctactgacg
      301 aaggtggctg agatggcccg ccagcaccct gggctgcata agcgagacct gtgccaaata
      361 caccaagaac cccttaagct gttctgtcag gatgaccaga cccccatttg tgtggtctgc
      421 agggaggccc aggagcaccg tatgcacagg gtgttgcctc tagatgaggc tgcaagagag
      481 tataagctca gattggagga ggacataaaa tatcttcggg aagagatgat gaagacagag
      541 acactgcaag ccaaggagga gcagacctta acggagtggc aggagagagt gaaagagcgg
      601 agagaacgca tcctggagga gttccagaag gtggtcttgt ttctggtgga agaagaacgg
      661 aggctcctcc agatcctgaa gaaagaggag gacgacacct tagggaagct gcaggatagc
      721 aaggcctccc tggaccacca aagtcgctcc ctggacctga tcctgttgca gctggaggag
      781 cagacccagc aggagcccct ccagatgctg caggatgtga aggacacctt gaccaggaag
      841 gagagcctca gcatgcagta tccagaggtg gtcctccccg tggctatcaa gactgtgtgc
      901 agagttccag gacagataga ggtgctcaaa agtttccaag aggatgtggt gccggacccc
      961 agcacagcat atccctatct cctcctgtac gagagccgcc agaggcggta cctgagcccg
     1021 ccgccagagg gcagcgcccc ctacagcaag gaccggttct tggcctaccc ctgcgctgtg
     1081 gggcagaaga gcttttcctc tggaaggcac tactgggaag tgggcatgaa tctcaccggg
     1141 gatgcactct gggccttggg ggtgtgcagg gacaatgtga gccgaaagga cagggtgctt
     1201 aagtccccag aaaatggctt ctgggtagtg cagctgtcca aggggaagaa acatctgccc
     1261 ctgctaccca attccattcc agtcacactc acggagcctc ccagccacat gggtatcttc
     1321 ctggacttcc aggccggaga ggtgtccttc tacagtgtga acgacgggtc ccatttgcac
     1381 agcttctccc aggttgcctt ccctgggccg ctgctgccgt tcttctgctt ggggtctcca
     1441 aagtcgggcc aaatggtcat ctccacagtg accatgtggg tgaagggata gaggcttgga
     1501 gaagggcaca gacactgggt gtgctatggt tccccagaag gcagggcgct tcaccaccgt
     1561 ggccacctac ctaggattct ctggattctc tggggtgcta agagttaata cctgtgctgg
     1621 cagggcaact aagcaaaata caatcaagat taaaatgctc aagtgagaaa gacgaaaaaa
     1681 aaaaaaaaaa aaaaaaaaaa aaa
//
