LOCUS       NM_001399546            2378 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus tripartite motif-containing 11 (Trim11), mRNA.
ACCESSION   NM_001399546 XM_006246505
VERSION     NM_001399546.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Tuoc,T.C. and Stoykova,A.
  TITLE     Trim11 modulates the function of neurogenic transcription factor
            Pax6 through ubiquitin-proteosome system
  JOURNAL   Genes Dev 22 (14), 1972-1986 (2008)
   PUBMED   18628401
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Matta,J.A., Cornett,P.M., Miyares,R.L., Abe,K., Sahibzada,N. and
            Ahern,G.P.
  TITLE     General anesthetics activate a nociceptive ion channel to enhance
            pain and inflammation
  JOURNAL   Proc Natl Acad Sci U S A 105 (25), 8784-8789 (2008)
   PUBMED   18574153
REFERENCE   3  (bases 1 to 2378)
  AUTHORS   Uchil,P.D., Quinlan,B.D., Chan,W.T., Luna,J.M. and Mothes,W.
  TITLE     TRIM E3 ligases interfere with early and late stages of the
            retroviral life cycle
  JOURNAL   PLoS Pathog 4 (2), e16 (2008)
   PUBMED   18248090
REFERENCE   4  (bases 1 to 2378)
  AUTHORS   Cooper,S.T. and Hanson,I.M.
  TITLE     A screen for proteins that interact with PAX6: C-terminal mutations
            disrupt interaction with HOMER3, DNCL1 and TRIM11
  JOURNAL   BMC Genet 6, 43 (2005)
   PUBMED   16098226
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2378)
  AUTHORS   Reymond,A., Meroni,G., Fantozzi,A., Merla,G., Cairo,S., Luzi,L.,
            Riganelli,D., Zanaria,E., Messali,S., Cainarca,S., Guffanti,A.,
            Minucci,S., Pelicci,P.G. and Ballabio,A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J 20 (9), 2140-2151 (2001)
   PUBMED   11331580
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006246505.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160894.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-547               JAXUCZ010000010.1  44257874-44258420
            548-643             JAXUCZ010000010.1  44261290-44261385
            644-874             JAXUCZ010000010.1  44262045-44262275
            875-897             JAXUCZ010000010.1  44267893-44267915
            898-998             JAXUCZ010000010.1  44267997-44268097
            999-2378            JAXUCZ010000010.1  44269332-44270711
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..2378
                     /gene="Trim11"
                     /note="tripartite motif-containing 11"
                     /db_xref="GeneID:360534"
                     /db_xref="RGD:1305448"
     exon            1..547
                     /gene="Trim11"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..1546
                     /gene="Trim11"
                     /EC_number="2.3.2.27"
                     /note="tripartite motif-containing protein 11; tripartite
                     motif protein 11; RING-type E3 ubiquitin transferase
                     TRIM11"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM11"
                     /protein_id="NP_001386475.1"
                     /db_xref="GeneID:360534"
                     /db_xref="RGD:1305448"
                     /translation="MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCW
                     GQPEGPYACPECREVSAQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCAAHREPLTTF
                     CGDDLSLLCPTCERSEHWAHRVRPLQEAADDLKGRLEKSLEHLRKQMEDAMLFQAQAE
                     ETCALWQKMVESQRQNVLGEFERLRRLLAEEEQQLLQKLEEEELEVLPRLREGAARLG
                     QQSTQLAALVSELESRCQLPALGLLQDIKDALCRVQDVKLQPPAVVPMELRTVCRVPG
                     LVETLRRFRGDITLDPDTANPELVLSEDRRSVQRGEQRQALPDSPERFDPGPCVLGQE
                     RITSGRHYWEVEVGDQTSWALGVCKETVNRKEKGELSAGNGFWILVFLGSFYNSNERA
                     FSPLRDPPKRVGIFLDYEAGHLSFYSATDGSLLFIFPETPFSGTLRPLFSPLSSSPTP
                     MTICRLIGVSGDTLGPQ"
     exon            548..643
                     /gene="Trim11"
                     /inference="alignment:Splign:2.1.0"
     exon            644..874
                     /gene="Trim11"
                     /inference="alignment:Splign:2.1.0"
     exon            875..897
                     /gene="Trim11"
                     /inference="alignment:Splign:2.1.0"
     exon            898..998
                     /gene="Trim11"
                     /inference="alignment:Splign:2.1.0"
     exon            999..2378
                     /gene="Trim11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgccggaa gtacccacta cccaggaggc taagagtgcc gctatctgct ccgggcccgc
       61 tcctcctgcg ctctctctgc ggaatagctt gattgccccc cggcaccacg aagagcctga
      121 tccaggcgca gccgctagca ccatggccgc tccagacttg tccaccaacc tccaagagga
      181 ggccacctgc gccatctgcc ttgattactt caccgaccca gtgatgactg actgcggcca
      241 caacttctgc cgggagtgca tccgacgttg ctggggccag ccggagggcc cgtacgcgtg
      301 ccccgagtgc cgcgaggtgt cggcgcagag gaacctacgg cccaaccgcc cgctcgccaa
      361 aatggcagaa atggcacggc gcttgcaccc gccttcgccc gtcccccagg gcgtctgcgc
      421 ggcgcaccgg gagccgctaa ccaccttctg cggcgacgac ctcagcctgc tgtgccccac
      481 ctgcgagcgc tcggagcact gggctcaccg ggtgcgaccg ctgcaggagg cggcggacga
      541 cctcaagggg aggctggaga agtcactgga gcacctgcgg aaacaaatgg aggatgcgat
      601 gctgttccaa gcccaggctg aggaaacctg tgccttgtgg cagaagatgg tggagagcca
      661 gcggcagaat gtgctgggcg agtttgagag gctgcgccgc ctactggcag aggaggagca
      721 gcagctgctg cagaagctgg aggaggagga gctggaggtt ctgccccgcc tgcgggaagg
      781 agctgcacgg ctaggccagc aaagcacgca gctcgcggcc ctcgtctcag agcttgagag
      841 ccgctgccag ctgccagcac tgggtttatt gcaggacatt aaggacgccc tgtgcagggt
      901 gcaggatgtg aagctgcagc ctccagcagt ggtgcccatg gagctgagga ctgtgtgccg
      961 ggtcccaggg ctggtggaga ccctgcggag gttccgaggt gacataacct tggacccaga
     1021 caccgccaac ccggagctgg tcttatctga ggaccggagg agtgtgcagc gtggtgaaca
     1081 gcggcaggcc ctgcctgaca gcccagagcg gttcgaccca ggcccctgtg tgctgggcca
     1141 ggagcgcatt acctctggcc gccactactg ggaggtagaa gttggggacc aaaccagctg
     1201 ggcacttggc gtgtgcaaag aaactgtcaa caggaaggaa aagggggagc tgtccgctgg
     1261 caatgggttc tggatcctgg tgttcctggg gagcttctat aactccaatg agcgggcctt
     1321 ctccccacta cgggaccctc ccaagcgtgt ggggattttt ctggactatg aagctggtca
     1381 tctctcattc tacagtgcca cagatgggtc gctgttgttt atcttccctg agaccccctt
     1441 ctcaggtaca ctgcggcctc tcttctcacc tctgtccagc agcccaaccc ctatgaccat
     1501 ctgcagactg ataggtgttt ctggggacac ccttggtccc cagtgaccca aaccttctag
     1561 gagagtccct tcacctctcc tggtcctttg tcctggccat gcagagaccc aggagccagc
     1621 tggcaccctg tgaagattag gaggagcaca cagtgccttt ctgaccacat gtgggaaacc
     1681 acaagttctc agtctcaggc agtctgattg agagtatatt gggctgggct ctgccctcat
     1741 gctggggatc attcccaccc ctgatgcctc ttagtgccca aagctctcac caaagcacta
     1801 agtcccatgt gtcaccagca cctcagattc taggttcctg taatgccata gacttttcca
     1861 gaagtagtca aggcttgtcc atgctgctgt gagcagtctg gtctgcctgc caagcacacc
     1921 acacagtccc tgaagtgata ctgggtaagg ttaggtagag ccagcttcaa gctcaccagc
     1981 atctcaggac ttggtctaat acatggaaga ctgctcagag ctgctgggtg tggctacaaa
     2041 gagaaattag aagataacag cctgatccca gagatgagac agtctggtgg gggctaatcc
     2101 taaaggagta ttcaacgttt gtattcagca cataaggggc ccagaagtag aactcagaag
     2161 tgacacttga acacaccctt ctattctgag acttgtctgg ttttgccctc aaaagggctc
     2221 ccctggtggc tgtggtacac tgcccctgct ttgcagactg agctgcacag tccggagtgc
     2281 acaggagcca gtagtgactg cttttgtata cacttccggg agttttatag tctatttatt
     2341 gaaagggaaa catttaaata aactcatctg aaatagtg
//
