LOCUS       NM_001108199            3861 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus transcriptional regulating factor 1 (Trerf1),
            mRNA.
ACCESSION   NM_001108199 XM_001061509 XM_236953
VERSION     NM_001108199.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3861)
  AUTHORS   Fujisaki,S., Sato,A., Toyomoto,T., Hayano,T., Sugai,M., Kubota,T.
            and Koiwai,O.
  TITLE     Direct binding of TReP-132 with TdT results in reduction of TdT
            activity
  JOURNAL   Genes Cells 11 (1), 47-57 (2006)
   PUBMED   16371131
REFERENCE   2  (bases 1 to 3861)
  AUTHORS   Gizard,F., Lavallee,B., DeWitte,F. and Hum,D.W.
  TITLE     A novel zinc finger protein TReP-132 interacts with CBP/p300 to
            regulate human CYP11A1 gene expression
  JOURNAL   J Biol Chem 276 (36), 33881-33892 (2001)
   PUBMED   11349124
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473987.2.
            
            [WARNING] On Aug 3, 2024 this sequence was replaced by
            NM_001108199.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_236953.4, XM_001061509.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3861
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..3861
                     /gene="Trerf1"
                     /note="transcriptional regulating factor 1"
                     /db_xref="GeneID:316219"
                     /db_xref="RGD:1307167"
     exon            1..1729
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             275..3637
                     /gene="Trerf1"
                     /codon_start=1
                     /product="transcriptional-regulating factor 1"
                     /protein_id="NP_001101669.1"
                     /db_xref="GeneID:316219"
                     /db_xref="RGD:1307167"
                     /translation="MGDQQLYKTNHVAHGGENLFYQQPPLGVHSGLNHSYGNTISGAG
                     MDAPQASPISPHFPQDTRDGLSLPIGSKNLGQMDASRQGGWGSHAGPGSHVQLRSNLA
                     NSNMMWGAPAQVEPTDGYQYTYSQASEIRTQKLTSGVLHKLDSFTQVFANQNLRIQVN
                     NMAQVLHTQSAVMDGASDSALRQLLSQKPVEPSASAIASRYQQVPQQPHPGFTGGLPK
                     PALPVGQHAPQGHLYYDYQQPLAQMSVQGGQPLQAPQVLSSHMQPLQQHQYYPQPPPQ
                     QQQAGLQRLSVQEMQQQQQQQIRPSPPQQQQQQQQQQQQQQLQLQQRQSSLQIPQYYQ
                     PQPMMQHLQEQQQPSMHLQPPSYHRDPHQYTPEQAHAVQLIQLGSMPQYYYQEPQQPY
                     GHPLYQQSHLSQHLQREDSQLKTYSSDRQTPALLSSHGDMGPSDTGVADPASSEMTRV
                     TSTLPHQPLLSPSGIHLNSMGSQHQQPSPSAMWPQMHLPDGRAQPGSPESSGQTKGVF
                     GEQFDAKNKLTCSICLKEFKSLPALNGHMRSHGGMRASPSLKQEIPRKHPPITAKVEE
                     PLKTPPEKKKFRHRPEPLFIPPPPSSYTPNPTSYSGATLYQSQLRSPRILGDHLLLDP
                     AHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGVHPQLPLTPLTPTPRVLLCRSSSI
                     DGSNVTVTPGPGEQTVDVEPRINIGLRFQAEIPELQDVSAMAQDTHKATLVWKPWPEL
                     ENQALQQQVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMATLETLLLRKPVRLK
                     CHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQCVEYYYTWKK
                     IMRLGRKHRTRLAEIIDDCMTSEEEEDAEEEEEDPEEDRKSIKDEESEVPKTPEPPPA
                     PALAPTEGAPMQAGGQPSGSFICEMPNCGAVFSSRQALNGHARIHGGTNQVAKTRGAV
                     PSGKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECGKVFFKIKSRNAHMKTH
                     RQQEEQQRQKAQKAAFAAEMAATIERTTGPVGAPELLPLDQLSLMKPKDVDILDDDMV
                     QQLGVMDEAEVVGTDLLLDNQDSVLLQGDTEL"
     exon            1730..1776
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1777..1927
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1928..2312
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2313..2379
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2380..2519
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2520..2623
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2624..2699
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2700..2788
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2789..2902
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            2903..3106
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            3107..3318
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
     exon            3319..3861
                     /gene="Trerf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtctggtc cgtacctcag cccgggtgag gatgtaggca cctcggctcc actgatgact
       61 ggttcaagcc aacagggacc cctgcctcca gccaccctca cagacatgtc agccgtggag
      121 tagggtggac tctttctctc atcttctcag ggtttcagga tttttttttc ttcatttcct
      181 cttttttgtt gttttttttg tttgtttgtt tgtttgtttt gttttgtttt gattttcgtt
      241 ttgtggctga acattcataa gcacggagga catcatgggg gaccagcaac tgtacaagac
      301 caatcacgtg gcccacggtg gtgagaacct cttctatcaa cagccacccc ttggcgtgca
      361 cagcgggctg aaccacagct atgggaatac aatctcgggg gctggaatgg acgccccgca
      421 ggcctcaccc atctctcctc acttccctca agatactcgg gatggtctca gcttgcctat
      481 tggctccaaa aaccttggcc aaatggatgc ctccaggcag ggaggatggg gaagccatgc
      541 aggacctggg agccatgtcc agcttcgtag caacttggcc aactcaaaca tgatgtgggg
      601 ggcgccggcc caggtggaac ccacggatgg ctaccaatac acgtattccc aggccagcga
      661 gatccggacc cagaaactca ccagtggtgt tttgcacaag ctggactctt tcacccaggt
      721 gtttgccaac caaaacctgc gaattcaggt caacaatatg gcccaggtgc tgcacaccca
      781 gtcagcagtg atggatggag cctctgacag tgccctccgt cagctgctgt ctcagaagcc
      841 tgtggagccc tcagcatcag ccatagcttc tcgctaccag caggtgcccc agcagcctca
      901 ccctggtttc acaggtggac tgcccaaacc agcccttcca gtcgggcagc atgctcccca
      961 agggcacctg tattatgact accagcagcc cctggcccag atgtccgtgc aaggcggaca
     1021 gccactgcaa gcccctcagg tgctgtccag ccatatgcag ccattgcagc agcaccagta
     1081 ttacccacag ccgccgcctc agcagcagca agccggactg cagcggctct ccgtgcagga
     1141 gatgcagcag cagcagcagc agcagattcg cccctcaccg cctcagcagc agcagcagca
     1201 gcagcagcaa cagcagcaac agcagctcca actgcagcaa cggcagagtt cactgcagat
     1261 acctcagtat tatcagcccc aacccatgat gcaacacttg caagagcagc agcagccatc
     1321 catgcacctg cagccccctt cgtaccacag ggaccctcac cagtataccc cggagcaggc
     1381 acatgcggtc cagctgatcc agctgggctc catgccccag tattactacc aggagcctca
     1441 acagccctac ggtcaccccc tctaccagca gagccacctg tcccagcacc tgcagcgtga
     1501 agacagtcag ctgaagacct actccagtga taggcagacc ccagctctgc tgagctctca
     1561 cggggacatg ggaccttctg atacaggggt ggcagatcca gcaagctcag aaatgacccg
     1621 ggtcaccagt acccttcctc accaaccgct cctgtccccc agtgggatcc acctcaacag
     1681 catgggatct cagcatcagc agccgtctcc cagtgcgatg tggccccaga tgcacttacc
     1741 tgatgggaga gcccagcctg gatctccgga atcaagcggc caaaccaaag gagtgtttgg
     1801 ggaacagttt gatgccaaga acaagctgac atgctccatc tgcctgaagg agttcaaaag
     1861 cctgcctgcc ctgaatggcc acatgaggtc ccacggggga atgagggcat cccccagcct
     1921 caaacaggaa atcccccgga aacatccgcc catcaccgcc aaagttgagg agcccctcaa
     1981 gaccccacca gagaagaaga agttccggca ccggcctgag cccctcttca tcccaccacc
     2041 gccttcttcc tatactccca accccacctc ttactcgggg gccaccctgt accagagcca
     2101 actgcgctcc ccacgcatcc tcggggacca cctgctcctg gaccccgccc acgaactgcc
     2161 cccctacaca ccgccaccca tgctgagccc cgtgcgccag ggctcagggc tcttcagcaa
     2221 tgtcctcatc tctggccacg gccctggagt gcacccccag ctgcccctca ctcccctcac
     2281 gcccacgcca cgcgtgctgc tgtgccgttc cagcagcatc gatggcagca atgtgacagt
     2341 caccccagga cccggagaac agactgtgga tgttgaacca cgcatcaaca ttggcttaag
     2401 attccaagca gagatcccag aactgcaaga cgtctccgcc atggctcagg acacacacaa
     2461 ggccacactg gtatggaagc cgtggcctga gctagaaaac caggccctcc agcaacaagt
     2521 ggagaacctt ctgaatttgt gttgttccag cgcgctgcca ggtggaggga ccaattcgga
     2581 atttgctttg cactctctct ttgaggccaa aggtgacgtg atggctaccc tggaaacgct
     2641 gctgctgcgg aagccagtca ggttaaaatg tcatccttta gcaaactacc actacgccgg
     2701 ttctgacaag tggacgtccc tagaaagaaa actgtttaat aaagcattgg ccacttacag
     2761 caaagacttt atttttgtac agaagatggt gaagtccaag acagtggctc agtgcgtgga
     2821 gtactactac acttggaaga agataatgcg gctagggcgg aaacaccgga cacgcctggc
     2881 agaaatcatt gacgactgca tgaccagcga agaggaagag gacgccgaag aggaggaaga
     2941 ggacccggaa gaagatagga aatccataaa agatgaggag agtgaagtac ccaagacacc
     3001 agagccaccg cctgcccctg ccctggctcc caccgagggg gcacccatgc aggctggtgg
     3061 ccaaccatca ggctccttca tttgtgagat gcccaactgt ggggctgtgt tcagctcccg
     3121 acaggcactg aatggccacg cccgcatcca tggcggcacc aaccaggtgg ctaagacccg
     3181 aggtgctgtc ccctctggga agcagaagcc aggtggcacc cagagtgggt attgctcagt
     3241 gaagagttca ccatctcaca gtaccaccag tggagagacc gaccccacca ccatcttccc
     3301 ctgcaaggag tgtggcaagg tcttctttaa gatcaaaagc cggaatgcac acatgaaaac
     3361 ccaccggcag caagaggagc agcagaggca gaaggctcag aaggcagcct tcgcggcaga
     3421 aatggcagcc accatcgaga ggactacggg gccggtgggg gcaccggagc tgctgcctct
     3481 ggaccagctg agcctgatga agcccaagga cgtggacatc ctggatgatg atatggtcca
     3541 gcagttaggc gtcatggacg aggctgaggt ggtaggcacg gatcttctct tggacaacca
     3601 agattcagtt ttgcttcagg gtgatacaga actctaaacc ccccgttcat cacctagaga
     3661 cacagaagcc acggcctcca cctccgtttg tctgcagaac ctggacttcc tgctcctttg
     3721 gaaacccttt taaactacct gtttaaaaag tggtcctttt cttcaggtta agggagggga
     3781 aaatccagtt ctttctcttt taccttcttt tgcattgttt ttgttggggg ttggggggaa
     3841 taaaaaattg gcacaactgt c
//
