LOCUS       XM_039084480            4991 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus triggering receptor expressed on
            myeloid cells-like 4 (Treml4), transcript variant X11, mRNA.
ACCESSION   XM_039084480
VERSION     XM_039084480.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084480.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4991
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4991
                     /gene="Treml4"
                     /note="triggering receptor expressed on myeloid cells-like
                     4; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 Proteins, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:680862"
                     /db_xref="RGD:1587021"
     CDS             1311..2144
                     /gene="Treml4"
                     /codon_start=1
                     /product="trem-like transcript 4 protein isoform X8"
                     /protein_id="XP_038940408.1"
                     /db_xref="GeneID:680862"
                     /db_xref="RGD:1587021"
                     /translation="MFCIWMLEVPAFWLPQPQKQMYTAGALSSDLICCPGVWGSTVIS
                     EELHRMVGQSLSVWCQYKPEEGPYVPKTWCRQTSPNRCQRMITTSEPLKAVRELQYMI
                     WDDPESGFFNITMTQLTEEDSAFYWCSLFNASQNIVTVLRNISLVVSPASSTLPSQTI
                     AWLPESTVTIFIYFLVLTTSPEEITDSSINGSEHRNQSSSSPGWTSLRLLVSLQYGLL
                     LLKGLMLSVFCVLLCWRRGQVSIYMAEIAMMDLSKLPHIPKSLGTLSHISGCEKKANQ
                     F"
ORIGIN      
        1 agcctgcttc ttaaaggcct tacactactc aggggactga gcttctgatc cacccacctt
       61 taagagcaaa tggaaattag atacaaacca cagcaagaca gagcaggaga ctgtatctct
      121 tgctctgctt tgcaaaggca ccaacttcat tcatgagcat ggagcccatg tgacctgtca
      181 actcctcaca ggccctacct cttttggagt tgagcttcat cacatgactt tgagggatat
      241 gggccttcag tccccccaac ccccaatcgc aggtcatgga atctttgaga cagggaggta
      301 ttcttccttt ccacttgttt atatactcca tcatcttcct aaactaaccc atacatgtag
      361 gtattatgct gaatataagc ataagcgtat tttattgcta gactgtccca gcctgggtca
      421 ccctttcttc cacacatttt tgcatgtgaa atgttaatgt gagatacttt ttctcatgtg
      481 ttcactcacc cactcatgtg tcccttcaat gaataccagt ttatatgatc acaaatttcc
      541 ctgcttcctt tctcacccct caaagattcc tccctcttga cttccattct aacgattctt
      601 cctcattgtt ctttaccccc agtaggcccc cctcatcttt tacagagacc atccttacag
      661 tttgatgttg gagtctggtg gctcacaaac cttccaggat gactatacat tggaggtgag
      721 ggccctgact tatcttaagg gtggggattt ccaggactct gggcacactc tagggacctt
      781 tgtcctttct cagggaaaaa gaaaagagga acaggcctcc tacttctcat atttttttag
      841 agtgttcttt tttgtagcaa caatggagga aagcgattgg tggatagtgc agagtagctg
      901 agatggggag aggatgagca ggggcgggga tgaaatgtga gggccagaga tggtctctgc
      961 agttaggagt ccccagtcag ggcctagcta ctcttcctct tatgggtcta taagcctgct
     1021 ttcccaggct ggccacttcc ccaatcgaag ctctgatctt gcttggttct tgcatctcac
     1081 agatgctgag actcaggaga agagtcctgc ctagttcaga gacctcctct ttttctcttc
     1141 tctcctccac tgacagagtc tgaactggta tgctactggt ccctttgctg ctggtgctcc
     1201 tggtctcagg tgagatgatt caggatataa ggcattgaga ggtgggataa aagaagaagg
     1261 gctggacagg aaccaggtta actctgtgac cagggctgac tttgggggtc atgttctgca
     1321 tctggatgtt ggaagtccct gccttttggc ttccccagcc tcagaaacaa atgtatacag
     1381 ctggagctct gtcctctgac ttgatttgtt gtccaggtgt ctgggggtcc acagttatat
     1441 ctgaagagct tcatagaatg gtaggacaga gtctctccgt gtggtgccag tacaagcctg
     1501 aggagggacc ttacgtgccg aaaacatggt gccggcaaac atctccaaat agatgtcaaa
     1561 gaatgatcac tacctctgag cctctgaaag cagtcaggga attacagtac atgatctggg
     1621 atgatcctga atctggcttc ttcaacatca ccatgactca gctaacagaa gaggactcgg
     1681 cattctactg gtgtagttta tttaatgctt ctcaaaatat agtaaccgtt ctcagaaaca
     1741 tcagcctggt ggtatctcca gcctcatcaa ctcttccttc acagacgatt gcttggctcc
     1801 cagaaagcac agttaccatc tttatatact tcttagttct gaccacctct cctgaggaga
     1861 tcactgactc ttccatcaat ggctctgagc acagaaacca aagttcttcc tctcctggct
     1921 ggacctccct gaggcttctg gtctctctgc agtatggact ccttctgctc aagggcctga
     1981 tgctgtcagt tttctgtgtg ctcctttgtt ggaggcgtgg ccaggtgagc atatatatgg
     2041 cagagatagc aatgatggac ctttcaaaat tacctcacat cccaaagtcc ttgggcacgt
     2101 tgagccatat ctcggggtgt gagaagaaag ctaaccagtt ctaaggctac ccagcgagca
     2161 gagcagtccc aactccagct ctactgaggc catcaggcaa gcccacggga gacaacagcc
     2221 agacccacac ctcaaatttt caaggctaac ggtcactctg atattgagca ccctcagtgc
     2281 tgcacccctc acagcccaga cctccccaaa gatgaccaac cacgggaagt taatctgcaa
     2341 cacccagctc aagtaccttt ccagaacccc acccccgggc cgttctcatt ttctctcctg
     2401 cctccgttgg catcacatac ctcacaggct ctgtttctct gctgaagttc acattcttgg
     2461 tttgcatcag agcagaacca ggtgacgccg tttcccctgg gcttcctctc ctctagctct
     2521 agatttccta aaataagggg aaaatgactt aaatgttaac atgggaacta agaaaggctg
     2581 tgcgttgcga accacaaact gtcaagaagt taaagggaaa aaagttttaa accgtacccc
     2641 tcatgcagcc acacatcaga gctgaccgcc aggggtcagt attgtgctgg tttatccagg
     2701 gactcaattt catccccata gagaaagtct gctcatacaa acagggttgt tggctggtgc
     2761 ggggagtggg gagtgggtgg acggagaaaa tcctttaggg aaaaaaaaaa agaatgtcac
     2821 atctgtaaaa caagaagagt ctagagtgat gttcagccca tgtgacgttc ggtagagcct
     2881 ggatactggc atttagtgtg gatatggaca tacactattg acaagctgaa tgcaaccgta
     2941 gccttgtaac cattaaaaag gccactatga aggatgcaca ttttagtctc cattttttta
     3001 tgttatgtgt gggagaataa aatatagatg tttctttata gccatttcat ctcatagcac
     3061 atgattgtta tctgtctgtg cacacacgtt tgctccgttt ctcctttgaa gtggagattt
     3121 ctggtttctt tgtaaactca cttgagtcac atgatgtttt cccagaagct gtctccggag
     3181 aggatgtttt gttgaagcag acacacaaga aggcatctga tgttttgctg gagtggatgc
     3241 tcgaaggggt gtgtggtgtt tgagaagagt atgaatggaa taccataaac agaggtcact
     3301 cttgccttgc aacacttcac tgggcttcag tgggctgggc tgggcttccc tgggcttccc
     3361 tgggctgcac tttgtagcta gaaatgcacc aaagaacatg tgatattctg gttgattcct
     3421 gccaattcgg cagaaccttg tggtttctgc tggattgagc tgctgctact ggttcatgtt
     3481 tggtgtttgc tattggattg gtgtggctgc ttgtattacg ttaatttgtt tccccaaaat
     3541 tgtttgcatg agaatctgca tgtctgaaga taacactgag ggactctgcc tccagttggt
     3601 tctgattggt aaagctgctg gagccaacag ctaggcaggg cagacagagg caggacctta
     3661 aggagggacc aagggagaga gaaagatctg acatactgac atactgggat ccctcacagt
     3721 ccttagggaa tagtaaaaga acacattaaa ccctaaaagc ccaacttcta aaacaaaaga
     3781 gaaccttcta cctctccaat gtacaattaa tgatagctct aactacattt aacatattta
     3841 acatctacaa aatctccaaa catcctgtct ccctccattg acacacaaaa gtcaccccca
     3901 cccccttcat cctagtatga tggcgagatc ctttggatag aatctggaag ggaccagacc
     3961 ttctccttac aaccaggagg ggtttcattt gtgttttccc acaggaccaa ccaaagccta
     4021 tctgagttcc ctctagaaat gaccgacacc acctcaccaa ccaagaagat ggcccacctt
     4081 ccacaagatc tggaaagaca tctatgacct ggtgactgcc acccaggcca tgtgccctcc
     4141 acaggcttcc ctctcctcta ttcttatagc tgcttttgtc cttcctgata ctaactctgc
     4201 tatggcccag cctctcccta gcccttcatc accagcccac aggccattcc caactccccg
     4261 aggttcccag cagtgtctgg gtgttccaga atttggtaat cttcatctca gctccagcct
     4321 gcaccatttc tcactccgac tggggccccc atttttaggc tgcattctgc caccctgagc
     4381 agtgtgttgg catgtcccat gagcccaaca ccctgatggt ggcaagaatg gagtgtagcc
     4441 tagtcccctt gcattttgtc tgctggagca gcattcagac actccagggg agaggcagaa
     4501 ctcggaccca tagagtcttt aacctggaga tcatttattc aactacactg actgaccagc
     4561 aagctcctgg aatccacctg tctgtgccca ccttgtattg ggaggatagg tgtatgcttc
     4621 tgcaccaggc tctgtactgg ggtcctaaac tcaggtcctc aagcttgtga ggcaagcact
     4681 ttacccactg acacatctct ttccagctct tctatagcct ttacatattt gatcttgcta
     4741 tcttggtctc aaaattctct tagcattttt cagattttaa aacttttatc aacatcctaa
     4801 tacctaaaag ttacctttgt ttgggttttg ggttttgcgg catattatca cattatccat
     4861 gtcctgtcag tagacctatt gaaaagtcca gcattgatat gatttttccc tctgttgatt
     4921 tattttatct ctttgagaca tttttaaaat ttttctttga aaatgatatt aaaatgtctt
     4981 aatgtgaagt a
//
