LOCUS       XM_039095555            3129 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus tRNA aspartic acid methyltransferase 1
            (Trdmt1), transcript variant X4, mRNA.
ACCESSION   XM_039095555
VERSION     XM_039095555.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3129
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3129
                     /gene="Trdmt1"
                     /gene_synonym="Dnmt2"
                     /note="tRNA aspartic acid methyltransferase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 1 long SRA read, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     19 samples with support for all annotated introns"
                     /db_xref="GeneID:291324"
                     /db_xref="RGD:1306292"
     CDS             110..736
                     /gene="Trdmt1"
                     /gene_synonym="Dnmt2"
                     /codon_start=1
                     /product="tRNA (cytosine(38)-C(5))-methyltransferase
                     isoform X4"
                     /protein_id="XP_038951483.1"
                     /db_xref="GeneID:291324"
                     /db_xref="RGD:1306292"
                     /translation="MEFPNSGTVQPQEYAVVEEGKLRVRTREPDVCLDSSSTQCSGQD
                     SILFKHETAADIDRKRQQDSDLSVQMLKGFLEDGDTAQYLLPAKSLLRYALLLDIVKP
                     TSRRSMCFTKGYGSYIEGTGSVLQTAEDVQIENIYKSLPDLPPEEKIAKLSMLKLRYF
                     TPKEIANLLGFPPEFGFPEKTTVKQRYRLLGNSLNVHVVSKLLTVLCE"
ORIGIN      
        1 ttgaagtttc ttctacaagc taggcattcc aaactcaagg ctacggtatt ttctcattgc
       61 gaagcttcag tcagagcctc tctgtttcca ggcccctggc cagatactga tggagtttcc
      121 taatagtgga acagttcagc cacaagaata tgcagtagtt gaagaaggca agctgagagt
      181 gaggacaagg gagccagatg tctgccttga tagcagcagc acccagtgct ctggacaaga
      241 tagcattctt tttaagcacg agactgcagc agacattgac aggaagcgcc aacaggacag
      301 tgacctctct gtgcagatgc tgaaaggttt ccttgaagat ggtgacacag ctcagtacct
      361 tctgccagcg aagtcgctgc tgcgctacgc tctcctcctc gacatcgtta agcccacctc
      421 caggaggtcc atgtgcttca ctaaagggta tggaagctac atagaaggga caggctctgt
      481 gttacagact gcagaggatg tgcagattga gaatatctac aaatctcttc ctgatttgcc
      541 accagaagag aagatagcta aattgtcaat gcttaaactg cgatatttca cacctaaaga
      601 aattgcaaat ctcctgggat ttcctccaga atttgggttt cctgagaaga caacggtgaa
      661 gcagcgttac cggctgctcg gcaacagcct caacgtgcat gtcgtctcaa agctccttac
      721 agtcctgtgt gagtgagaga cgtgggagag ccgctgaggc gtcagagtat gcctctaatt
      781 ctagacagtc atcccaaaat tctatcttga attaattctt ataaaactca actaaattat
      841 tttagttgcg ttttagcggg taattcagag ggaacttaaa tgtgcatatc ttattgtttc
      901 cttaaattta tattactgta tctgacaaac ttcacattgc tgtttttgct ttatgggcaa
      961 atatttttta taaagcttta aacatgtaca ttaaatattt tatattttgc tataaacaaa
     1021 tttaagaatg tttgaatttt tgtatgtata ttagtacttt ataaagtata acatgaatag
     1081 tatggtcctt agaaaattat ttttgtatgt taatttaaaa attgttttat ataacgtgga
     1141 gaaactaact ggatgtagac ctggaagctt catcccttct gctagctttc acactgctgt
     1201 tcatgctgct gcaagcaaat gtagccattg ttcttaactt gctatgaact gctacagtag
     1261 tgactgtcct gctaagatat gcccgtgagg gtcatgggaa tggccaactg ctctgtgatt
     1321 taagaccaga tcaatgagat agaattcata cctggccctg ctatctggtt caaagacctg
     1381 tggctggata ggtcatgggc cctagcggct aatctactag tattctgtta aatgggcatt
     1441 gcattaaatg atttctggtg gtttattctt ctaccataga ttagtgtttc cctcaacatt
     1501 caccaggtaa gccttttgca gtagatggca attcagaagg ccagagaacg gagactgctg
     1561 cgggctcagc cctaagtggg acatgtctgt cactctcctc cctaccgagg cttagagatc
     1621 agtgcagagg agggagcaaa agcactgtaa agccacaagt ggtagatgac attaggaaga
     1681 cactttccat atagcaggac gactgtcatg tggactcata gctaggtgac agcatgcaat
     1741 gagcttgaat cccagacagg atctcggcat ggagcagggt agactgggta ctaagtcaca
     1801 cccctagctg agaggctacc ggcatttggt agcttctagg agagaaagag tcagattcct
     1861 ttgaaggcgt gattccttat atgtggagca cccccggggt aggcttatag tcaagaagag
     1921 ttgagcaaca cagattggac tggacttttt tttaagagga cacaaagttg ggtggatagg
     1981 ggaaggagtg tgaatacaat ccaaataaat tgtataatat tctcaaagaa tattatttaa
     2041 aaaattagaa attgtttcat gactcttaat ataatactct ttttgttaat ttatctacct
     2101 ttttagacaa atgtatatat tttaaaccaa attgtcatca tccaacatgg acatcagtct
     2161 ggagaatgta ttagaaaaaa atgctcataa attcttaatc aagtctttga aaaatgcagg
     2221 tgactttttt tgagacaggt ttcactgggt agccctgggt ggcctggact atctaatcca
     2281 gtctggcttc taactgaggg atgtgtctgc cccaacctcc ggtgtgctag ctagaattaa
     2341 aggccagcag tactaaacct ggcttccttg ttaatctgaa gataaaactt cattgtccta
     2401 ccttcatttc acatccttcc ttttagtttg ctattaccag ggtgcttttg ctttgtcagc
     2461 ctgggggtta aatgtgtctg ttgttacagt ctaaggaata tggcacagcc tatgtggcag
     2521 taggggtaag gaaaccgtgc tgctatttct gtatggtgct accccatcct ttatagtacc
     2581 gactctgaac ttaccttttt ctctgtgcaa tcatggcatc agtaaagaac ggataaataa
     2641 agtgtgttgg agacatatac tagaatacca gcagtactac ctggaatggt tttatgatat
     2701 gtgccatgac caggaggagc cttgccgatc atgaaaagac aagagtggtt tctttccact
     2761 aggagtcaag ttcatataga cagtaaggag ggcagtgttt gcagggcttg ggaggagggg
     2821 atgaggaagt cagtgtttag caggtacaga gtttctgttt gcgaacatga gaaagtcctg
     2881 agggtaggag gcattgctgg ttggacatgg tgaatgtgct tagtgccacc aaactgtaca
     2941 cttaaagtct attaagtggc taattttata ttatgtagat tatactggaa ttaaaaaaat
     3001 tacttctgaa ctcaggtaaa tatgggtata tcgaagctat aagctatgta tgtatccaca
     3061 gtcactgtct acatttgtat gtgtttttaa agatgaacct cattaaaatc tcataattat
     3121 aatctgaaa
//
