LOCUS       NM_001034156            4105 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 9
            (Trappc9), mRNA.
ACCESSION   NM_001034156 XM_001068491 XM_235402
VERSION     NM_001034156.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4105)
  AUTHORS   Zhang,Y., Bitner,D., Pontes Filho,A.A., Li,F., Liu,S., Wang,H.,
            Yang,F., Adhikari,S., Gordon,J., Srinivasan,S. and Hu,W.
  TITLE     Expression and function of NIK- and IKK2-binding protein (NIBP) in
            mouse enteric nervous system
  JOURNAL   Neurogastroenterol Motil 26 (1), 77-97 (2014)
   PUBMED   24011459
REFERENCE   2  (bases 1 to 4105)
  AUTHORS   Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
            Sacher,M.
  TITLE     C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
            early stage in ER-to-Golgi trafficking
  JOURNAL   Mol Biol Cell 22 (12), 2083-2093 (2011)
   PUBMED   21525244
REFERENCE   3  (bases 1 to 4105)
  AUTHORS   Mochida,G.H., Mahajnah,M., Hill,A.D., Basel-Vanagaite,L.,
            Gleason,D., Hill,R.S., Bodell,A., Crosier,M., Straussberg,R. and
            Walsh,C.A.
  TITLE     A truncating mutation of TRAPPC9 is associated with
            autosomal-recessive intellectual disability and postnatal
            microcephaly
  JOURNAL   Am J Hum Genet 85 (6), 897-902 (2009)
   PUBMED   20004763
REFERENCE   4  (bases 1 to 4105)
  AUTHORS   Xiong,F., Gao,J., Li,J., Liu,Y., Feng,G., Fang,W., Chang,H.,
            Xie,J., Zheng,H., Li,T. and He,L.
  TITLE     Noncanonical and canonical splice sites: a novel mutation at the
            rare noncanonical splice-donor cut site (IVS4+1A>G) of SEDL causes
            variable splicing isoforms in X-linked spondyloepiphyseal dysplasia
            tarda
  JOURNAL   Eur J Hum Genet 17 (4), 510-516 (2009)
   PUBMED   19002213
REFERENCE   5  (bases 1 to 4105)
  AUTHORS   Hu,W.H., Pendergast,J.S., Mo,X.M., Brambilla,R., Bracchi-Ricard,V.,
            Li,F., Walters,W.M., Blits,B., He,L., Schaal,S.M. and Bethea,J.R.
  TITLE     NIBP, a novel NIK and IKK(beta)-binding protein that enhances
            NF-(kappa)B activation
  JOURNAL   J Biol Chem 280 (32), 29233-29241 (2005)
   PUBMED   15951441
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Oct 10, 2014 this sequence version replaced NM_001034156.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760476, SAMN16676788
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-302               JAXUCZ010000007.1  106887062-106887363 c
            303-895             JAXUCZ010000007.1  106883586-106884178 c
            896-1041            JAXUCZ010000007.1  106877915-106878060 c
            1042-1170           JAXUCZ010000007.1  106876289-106876417 c
            1171-1292           JAXUCZ010000007.1  106858645-106858766 c
            1293-1418           JAXUCZ010000007.1  106853270-106853395 c
            1419-1635           JAXUCZ010000007.1  106840596-106840812 c
            1636-1779           JAXUCZ010000007.1  106828484-106828627 c
            1780-1906           JAXUCZ010000007.1  106790884-106791010 c
            1907-2052           JAXUCZ010000007.1  106780458-106780603 c
            2053-2138           JAXUCZ010000007.1  106776653-106776738 c
            2139-2265           JAXUCZ010000007.1  106773900-106774026 c
            2266-2398           JAXUCZ010000007.1  106769470-106769602 c
            2399-2562           JAXUCZ010000007.1  106765209-106765372 c
            2563-2715           JAXUCZ010000007.1  106754462-106754614 c
            2716-2840           JAXUCZ010000007.1  106732788-106732912 c
            2841-2983           JAXUCZ010000007.1  106578003-106578145 c
            2984-3094           JAXUCZ010000007.1  106558325-106558435 c
            3095-3248           JAXUCZ010000007.1  106513610-106513763 c
            3249-3339           JAXUCZ010000007.1  106506209-106506299 c
            3340-3563           JAXUCZ010000007.1  106411305-106411528 c
            3564-4105           JAXUCZ010000007.1  106410339-106410880 c
FEATURES             Location/Qualifiers
     source          1..4105
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..4105
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /note="trafficking protein particle complex subunit 9"
                     /db_xref="GeneID:315059"
                     /db_xref="RGD:1309461"
     exon            1..302
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            303..895
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     CDS             312..3731
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /note="NIK and IKK(beta) binding protein; NIK and
                     IKK{beta} binding protein; trafficking protein particle
                     complex 9"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 9"
                     /protein_id="NP_001029328.1"
                     /db_xref="GeneID:315059"
                     /db_xref="RGD:1309461"
                     /translation="MSVPDYMQCAEDHQTLLVVVQAVGIVSEENFFRIYKRICSVSQL
                     SVRDSQRALFIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFSPKDWPQTFEKFHVQ
                     KEIYGSTLYDSRLFVFGLQGDVAEQPRPDVAFYPNYDDCDSVEKRIEDFIESLFIVLE
                     SKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGM
                     LQDALVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKTGARRLPGNSL
                     PSEAANRHRPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVI
                     ELEACVKAVRVLAIQKRGMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFH
                     RKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLDPKDFNKGTHRGWAAV
                     QMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQSLENYTAKCPGT
                     MEPITLPDGLTLPPVPFTKLPIVRCVKLLSLPTSLRPQKVKSLLGQSMSTKSPFIYSP
                     IIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAA
                     LSLPAESGLYPVTLVGVPQTTGMITVNGYHTTVFGVFSDCLLDNLPGLKTSGSTVEVI
                     PALPRLQISTSLPRSAHSLQPSAGDEIATNVSVQLFNGETQQLAITLENIGLEPLEQL
                     EVTSKLLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKAKLDFSCQENLLQD
                     LSDDGISVSGFPLSSPFRQVVRPRVESRPTNPSEGSKTGDLGHVKTLEAILNFKYSGG
                     PGHVEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQCHLLLDVFNSTEHELTVCAR
                     NNSELVLHASECQRMAIQVDKFNFESVPESPGEKGHFANLKQLEEERQEARGLEISSK
                     LDIRWRIPSLKRSGEASVEGLLNQLILEHLQLAPLQWDVLVDGQPCDCEVAAACQVGD
                     PVRLEVRLTNRSPRSVGPFALTVVPFQDHQNGVHNYDLHDVISFVGSSTFYLDTVQPS
                     GQSACLGALLFLYTGDFFLNIRFHEDCKSKELPPSWFCLPSVHVRALEAQA"
     exon            896..1041
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1042..1170
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..1292
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1418
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1419..1635
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1636..1779
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1780..1906
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            1907..2052
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2053..2138
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2139..2265
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2266..2398
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2399..2562
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2563..2715
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2716..2840
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2841..2983
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            2984..3094
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            3095..3248
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            3249..3339
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            3340..3563
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
     exon            3564..4105
                     /gene="Trappc9"
                     /gene_synonym="Nibp; RGD1309461"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcccttcc tgctccctcc ctagtgccct ccacttcctt ctctttccac tagtcttctt
       61 ccactccagt cttccagtac caccctttct tccttttcct cctctctttt atccctcctc
      121 cctcttctcc gcctccctct cagcctccag gtcttcggga aaactcgggg cagattttag
      181 gcctgaacac gacttgcgca cgcgcaggag ctgcgccggc tcgaccggtg gttctgaggt
      241 tccaggctgc tcagtcccgc tgccctccag gcctcggctc ctgcttgggg ccactgcgct
      301 gtgccctcag gatgagcgtt cctgactaca tgcagtgcgc agaggaccac cagaccctcc
      361 tggtggtcgt tcaggccgtg ggcatcgtct ctgaggagaa cttcttcagg atctacaagc
      421 ggatctgctc ggtgagccag ctcagtgtgc gcgactcaca gcgtgcactc ttcatccgtt
      481 accggcacca ctacccgccg gagaacaacg agtggggcga cttccagacg caccgcaagg
      541 ttgtgggcct cattaccatc accgactgct tctcgcccaa agactggcca cagactttcg
      601 agaagttcca cgtgcagaag gagatctacg gctccacgct ctacgattcc cgcctctttg
      661 tgtttgggct gcagggtgat gtggctgagc agccccgccc ggatgtggcc ttctatccca
      721 actatgatga ctgtgattca gtggagaagc gcatcgaaga cttcatcgag tcccttttca
      781 ttgtgttgga gtccaagcgc ctggacagag ccacggacaa gtccggggac aagatccctc
      841 ttctctgtgt ccccttcgag aaaaaggact tcgtgggact agacacggat agcagacact
      901 ataagaagcg gtgccaagga cgcatgcgga agcacgttgg ggacttgtgc ctccaggctg
      961 ggatgctgca ggacgccctg gtacactacc acatgtccgt ggagctcctg cgctcagtga
     1021 atgacttcct gtggttaggg gctgccctgg aagggctgtg ttctgcttcc gtcatctacc
     1081 attatcctgg aggaactggc ggcaagaccg gggctcggag actcccaggc aactcacttc
     1141 cctcagaagc agccaaccga caccggccag gtgctctcac cactaacggc ataaatcctg
     1201 acaccagcac ggagatcgga agggctaaga actgcctcag ccccgaggac ataattgaca
     1261 aatacaaaga ggccatctcc tattacagca agtataagaa tgccggagtg attgagctgg
     1321 aagcgtgtgt caaggccgtg cgtgtcctgg ctattcagaa gcgtggcatg gaagcttcgg
     1381 agtttcttca gaatgccgtg tacatcaatc tccggcagct ttctgaagaa gagaaaatcc
     1441 agcgctacag catcctgtcc gagctctacg agctgattgg cttccaccgc aagtcagcat
     1501 tcttcaagcg cgtggctgcc atgcaatgcg tggccccaag catcgcagaa cctggctgga
     1561 gggcctgtta caagctcctt ttggagacat tgcctggcta cagtctgtca ctagacccca
     1621 aggacttcaa caaaggtaca cacagaggct gggctgccgt tcagatgcgt ctgctgcatg
     1681 agttggtcta tgcctcccgc aggatgggaa atcccgcact ctctgtgcgg cacctatcct
     1741 tccttttgca gaccatgctg gatttcctgt ctgaccagga aaagaaagat gtgactcaaa
     1801 gcctggagaa ctataccgcc aagtgtcccg ggacgatgga gcccatcacc ctcccggatg
     1861 gcctcacgct gcctcctgtg ccctttacta agctgcccat tgtcaggtgc gtgaagctgc
     1921 tgagtctccc caccagcctc cggccgcaga aggtgaaaag cttgctgggg cagagcatgt
     1981 ccaccaagag tcccttcatc tattccccaa tcatcgcaca caaccgtgga gaagaacgca
     2041 acaagaaaat agatttccag tgggttcaag gagacgtgtg tgaagtccag ctgatggtgt
     2101 acaacccgat gccgtttgag ctccgcgtgg aaaacatggg gcttctcacc agcggagtgg
     2161 agttcgagtc tcttcctgca gcactctccc ttcctgcgga atctggtttg tacccggtga
     2221 cactggtcgg ggtcccacag actacaggga tgatcactgt gaatggctac cacaccacag
     2281 tctttggggt cttcagcgac tgtcttctgg acaacctccc aggactgaaa acgagcggct
     2341 ccaccgtgga agtcatccct gccttgccaa gactgcagat cagcacatcg ttgcccaggt
     2401 ctgcacactc actgcagcct tctgccgggg atgagatagc cactaatgtg tctgttcagc
     2461 ttttcaatgg ggagactcaa cagctcgcca ttaccttgga gaacattgga ctggagcctc
     2521 tggagcagct ggaggtcacc tcaaagcttc tcaccactaa ggagaagttg tacggcgact
     2581 tcttgagctg gaaactggaa gaaacgctgg cccagttccc tctgcagccc gggaaggtgg
     2641 ctactttcac catcaacatc aaggcaaagc tggacttctc ttgccaggag aacctccttc
     2701 aggatctgag tgatgatgga atcagtgtga gcggctttcc cctgtccagt cctttccgcc
     2761 aggttgtccg gccccgagtg gagagcagac ccacaaaccc ttccgagggc agcaagacgg
     2821 gggaccttgg ccacgtcaag actctggaag ctatcctgaa cttcaagtac tctggaggcc
     2881 caggccacgt ggaagggtat tacaggaacc tctctctggg attacatgtg gaagttgaac
     2941 cctctgtgtt ttttaccaga gtcagcacac ttccagcaac cagcacccgg cagtgccact
     3001 tgctcctcga tgtcttcaac tccacagagc acgagctgac agtctgcgcc agaaacaact
     3061 ctgaacttgt cctacatgcc agtgagtgcc agcgaatggc tattcaagtg gacaagttca
     3121 actttgaaag tgtcccagaa tcccccggtg agaagggaca ctttgcaaat ctgaaacagc
     3181 tggaagaaga gagacaagag gcacgaggcc tggagatcag cagcaagctg gacatccgct
     3241 ggagaatccc gtctctgaag cgcagtggtg aggcgagcgt ggagggcctc ctgaaccagc
     3301 tcatcctgga acacctgcag ctggcacctc tgcagtggga tgtgctggtg gatgggcagc
     3361 cgtgtgactg tgaggtggca gctgcctgcc aggtcggtga ccccgtgcgt ttggaggtgc
     3421 ggctgactaa caggagtcct cgcagcgtgg ggcccttcgc cctcaccgtg gtcccattcc
     3481 aggaccacca gaatggtgtg cacaactatg atctgcatga tgtcatctcc tttgtgggtt
     3541 ccagcacctt ctaccttgac acggtacagc catcaggcca atcagcctgc cttggggccc
     3601 tcctcttcct ctacacaggt gacttcttcc tcaacatccg gttccatgag gactgtaaaa
     3661 gcaaggagct gccaccgtcc tggttttgct tacccagcgt gcatgtgcgt gccctagagg
     3721 cacaggcctg agcccctctc ccctgacggc atgtcctcct tacaccataa ccagtgctcc
     3781 tcctccctcc cagaagtcac cctgtggctc caccctgctt tatttttggc ctgttatgct
     3841 gagtgacctc acatccagtg ccagcctggg tgccccctgt atgcccagcg ctgcagagga
     3901 gcctttctga tctgccatct cccttgagtt tcctgaggtc tggctcagcc cttcaaatgt
     3961 cactggcaac ccaagcaagg gaggggacag tgtggtgacc atggtgagga ggcatcaggg
     4021 tgtttcctgc ctctgtgttc tggtctccaa gtctgtgtat ttatgttgct atgttctcca
     4081 ataaaggtct gccttgcttc cctca
//
