LOCUS       NM_001106160            5157 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 8
            (Trappc8), mRNA.
ACCESSION   NM_001106160 XM_001053125 XM_214614
VERSION     NM_001106160.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5157)
  AUTHORS   Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
            Sacher,M.
  TITLE     C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
            early stage in ER-to-Golgi trafficking
  JOURNAL   Mol Biol Cell 22 (12), 2083-2093 (2011)
   PUBMED   21525244
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473974.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_214614.4, XM_001053125.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..5157
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p12"
     gene            1..5157
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /note="trafficking protein particle complex subunit 8"
                     /db_xref="GeneID:291750"
                     /db_xref="RGD:1309102"
     exon            1..181
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     CDS             25..4326
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /note="trafficking protein particle complex subunit
                     8-like; trafficking protein particle complex 8"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 8"
                     /protein_id="NP_001099630.1"
                     /db_xref="GeneID:291750"
                     /db_xref="RGD:1309102"
                     /translation="MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLK
                     PFSRLTSEVHMRDPNNQLHIIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGL
                     VANVITAGDYDLNISATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSAEAEPM
                     EQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKY
                     GTQGCYLLKINSRAPNRASDEQIPDPWSQYLQKNSIQNQESYEDGPCTMTSSKNSDSN
                     LLSLDGLDNEVKDGLPDNCRVHPLQIDQCGDTPHNTDGSDHAKSASSVHETKKASTGL
                     IRGACLTLTDHDRIRQFIQEFTFRGLLPHVEKTIRQLNDQLISRKGLSRSLFSATKKW
                     FSGSKVPEKSISELKSTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDF
                     LNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLL
                     SAEILKSQSKYAEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKNPMVRKYAFHMIL
                     AGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAF
                     RHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHD
                     RRPADGEKQAATHVSLDQEYDAESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSY
                     SDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDTSGKDTEKERVTGE
                     PEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGAL
                     PGCHTGKHSLGMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIVTEEMPLLEV
                     FFIHFPTGLLCGEIRKAYVEFVNVSQCPLTALKVVSKRPEFFTFGGNTAALTPLSPST
                     SENCSAYKTVVTASPSLGTAFVSTASSVDFGTGTGQQLEAIPVPLPDSVLLPGASVQL
                     PMWLRGPDEEGVHEINFLFYYESVKKQPKKRHRILRHTAVICTSRSLNVRATVCRSNS
                     LEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHRSVNISENRDAKL
                     ASREKGKFCFKAVRCKQKEGDKQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSE
                     LRRTQDQLPAYPEKNASEGAVRLIEKCSEVDLSIVVLWKAYVVEDNKQLILEGQHHVV
                     VRTVGKEACSHSQKQEPPEMELLKFFRPENTTVSARPSVEQLSNLIKTSLHYPESFHH
                     PFHQKSLCLVPVTLLLSNCSKAEVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQL
                     KSQETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA"
     exon            182..376
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            377..466
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            467..641
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            642..795
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            796..889
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            890..1146
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1147..1262
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1263..1413
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1414..1514
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1515..1620
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1621..1752
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1753..1977
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            1978..2086
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            2087..2281
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            2282..2406
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            2407..2481
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            2482..2608
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            2609..2763
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            2764..3206
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3207..3354
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3355..3451
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3452..3520
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3521..3579
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3580..3753
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3754..3855
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            3856..4001
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            4002..4091
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
     exon            4092..5157
                     /gene="Trappc8"
                     /gene_synonym="RGD1309102"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggccgggc gcccggccgc gatcatggcc cagtgcgtgc agtcggtgca ggagctcatc
       61 cccgactcct tcgttccctg cgtcgccgcg ctgtgcagtg acgaagccga gcggctcact
      121 cgcctcaacc acctcagctt tgccgagctg ctcaagccct tctctcgcct cacttccgaa
      181 gttcacatga gagatcctaa taatcaactg catataatta aaaatttgaa gatagcagta
      241 agcaacattg tcacccagcc acctcagccg ggagccattg ggaagctttt gaatgatgtt
      301 gtttctggca gccagcctgc agaaggatta gtcgctaatg tgattacagc aggagattat
      361 gaccttaata tcagtgctac tactccatgg tttgagtctt acagagagac ctttctgcag
      421 tccatgccag catcagatca tgagtttctg aatcactatt tagcatgtat gctggtggca
      481 tcatctgctg aagcagaacc catggaacag ttttcaaagt tgtcacagga acagcatcga
      541 attcagcaca acagtgatta ttcctaccct aagtggttta tcccaaatac acttaaatat
      601 tacgtgcttt tgcatgatgt gacttcagga gatgaacaga gagctgaatc aatttatgaa
      661 gaaatgaaac agaaatatgg aactcagggt tgctatttac ttaaaattaa ttctcgagca
      721 ccaaatcgag catcagatga gcagatacca gatccttgga gtcagtatct ccagaaaaat
      781 agtattcaaa accaggaatc atatgaagat ggcccttgta ctatgacctc cagtaagaat
      841 tctgatagta acttgctttc attggatgga ctagataacg aagtcaaaga tggccttcca
      901 gataactgca gagttcatcc acttcaaata gaccagtgcg gtgacactcc tcataacacc
      961 gatggctcgg atcatgcaaa gtctgcttct tcagtacatg agacaaagaa agcaagcact
     1021 ggactgattc gtggtgcctg tttaacactt actgatcatg atagaattcg acagtttata
     1081 caagaattta cattccgtgg ccttttgcca cacgtagaga aaacaattcg tcagttaaat
     1141 gatcagctaa tatcaaggaa aggtttgagt cgatctctgt tttctgccac taagaagtgg
     1201 ttcagtggca gtaaagttcc agaaaagagc atcagtgagc tgaagagcac gtcggggttg
     1261 ttgtatccac cagaagcacc tgagcttcag atcaggaaga tggcggactt gtgctttttg
     1321 gtgcaacact atgatttggc ctacagttgc tatcacactg caaagaagga ctttcttaat
     1381 gatcaagcca tgctttatgc agcaggtgcc ttggaaatgg cagcagtgtc agcctttctt
     1441 cagcctggag ctcccaggcc gtaccctgct cattacatgg acacagcaat tcagacatat
     1501 agggatatct gcaagaatat ggtgctggct gaaagatgtg tgttgcttag tgccgaaatt
     1561 ttaaaaagtc aaagcaagta cgcagaggct gcagctcttc taatacggtt gacaagcgag
     1621 gattctgatc tccgaagtgc acttcttttg gaacaggctg cacattgttt cataaacatg
     1681 aagaacccca tggttagaaa atacgcattt cacatgatcc tggcaggcca ccgttttagt
     1741 aaagcagggc agaaaaagca cgctttgcgc tgctattgtc aagccatgca agtttacaaa
     1801 ggaaaaggct ggtctctggc agaggatcat atcaacttca ccatcgggcg ccagtcctat
     1861 actctgaggc agctggacaa cgctgtttcc gctttcagac atattttaat caatgaaagc
     1921 aagcagtctg ccgctcagca gggagccttc ctcagagaat atctctatgt ttataagaat
     1981 gtaaatcagc tgtcaccaga tggcccttta ccacagcttc ccttaccata cattaacagt
     2041 tcagcaacac gggttttctt tggccatgac agacgaccag cagatggtga aaagcaagcg
     2101 gctactcatg tgagtcttga tcaagagtat gacgctgagt cgtcccagca gtggcgagaa
     2161 cttgaggagc atgttgtggc tgtggctaat aaaggagtaa tcccatccag tttctatcct
     2221 acacagtatt gcttgaacag ttactccgat aactccagat ttccactggc agttgtagaa
     2281 gagccaatta ctgtggaagt ggcttttaga aaccctttaa aagttccgct tttgctgtct
     2341 gatttgtcat tgctctggaa gtttcagcct aaagacacca gtgggaaaga cactgaaaaa
     2401 gaacgagtta caggtgaacc tgaaatgatt ggaactgaag ttatttcaga atttttaatt
     2461 aacagtgaag aatctaaagt ggcaagactg aagctctttc cccatcacat aggggagctg
     2521 cacatcctgg gagttgtgta taatcttggc actattcagg gctccgtgac agtagatggc
     2581 attggtgctc ttcctggatg tcacacagga aaacattctc tgggtatgtc cgtccgaggg
     2641 agacaggatt tagaaattca aggccctcga cttaacaaca ccaaggagga gaagacgtct
     2701 gttaagtatg gccctgaccg acgtttggac cccatagtca cggaagagat gccgctcctg
     2761 gaggtgttct ttatacattt tcctacaggt ctcctctgtg gagaaatccg aaaagcatat
     2821 gtagagtttg tcaatgtcag ccagtgtcct ctgactgcat tgaaagtggt atctaaacgt
     2881 cccgagttct tcacttttgg tggcaatact gctgctctaa caccgctgag cccctccaca
     2941 tctgagaact gcagtgccta taagacggtt gtgacagcgt ccccctcctt ggggacagca
     3001 tttgtgtcaa cagcatcatc tgtggacttc ggaactggca caggacagca gctggaggcc
     3061 attcctgtcc cccttcctga ctctgtgcta ctccctggag cttctgtcca gctgccaatg
     3121 tggcttcgtg ggccagacga agaaggtgtc catgaaatta actttttatt ttactatgaa
     3181 agtgttaaaa agcagcccaa aaaacgacac agaatattaa gacacactgc agttatttgc
     3241 actagccggt ctttgaacgt gcgagcgact gtttgtagaa gtaattccct tgaagacgaa
     3301 gaaggcaggg gcggcaatat gctagtcttc gtggatgtag aaaataccaa tactagtgaa
     3361 gcgggagtta aggagttcca catggtgcag gtgtcaagta gcagcaagca ctggcagcta
     3421 cacagatccg tgaacatctc cgaaaacaga gatgccaaac ttgccagtag agagaaggga
     3481 aagttttgct tcaaggcagt aagatgtaaa caaaaggaag gtgataaaca gtcctcagaa
     3541 aaatacactt ttgcagatat catctttgga aatgaacaga taataagttc agcaagtcca
     3601 tgtgcagatt tcttttaccg aagtttatcc tcagagttga gaagaacaca agaccagctt
     3661 cccgcctatc ccgagaaaaa tgcctcagag ggtgctgtca ggctgattga gaagtgcagt
     3721 gaggtggacc tgagcattgt cgtcctgtgg aaggcatacg ttgtggaaga taacaagcag
     3781 cttattttag aaggccagca tcatgttgtc gttcgcactg ttggcaaaga agcctgttca
     3841 cactctcaga aacaggagcc accagaaatg gaactattaa agttttttag gccagaaaac
     3901 actacagttt ctgcaagacc atcagtagag cagctttcta atctcattaa aacaagtctc
     3961 cactacccgg agtcatttca tcatccattt catcagaaaa gcctttgctt agtgccagtc
     4021 acccttttac tttctaactg ttctaaggct gaggtagatg taatagttga tctccggcat
     4081 aaaacaacaa gtccagaggc attggaaact cacggatcat tcacatggct tggacagaca
     4141 cagtataaac tccagctgaa aagccaagag acgcacagtt tgcagctgaa ggcatgcttt
     4201 gttcatacag gcgtttataa ccttggaact ccaagggtat tcgccaagtt atcggaccag
     4261 gtgacagtat ttgaaacaag tcagcagaac tccatgcctg ctttgattat catcaataac
     4321 gcgtgacagc cgagagtcac agactcagtc tgactttgtg gagttggttt tacaacagcg
     4381 tttgaaatac ccaacttgtt caggaagttc tctgatcact gcaaaacaca ggggcttggc
     4441 acttagctga cacagtatgc tgggctgaga atgcttagac tccccctttt tttttcccct
     4501 tttaaacctg gtaataattt acatgcttat aatacagaat tcaatgtatc catacacctt
     4561 aagccttaag tcttaaaaaa acgtccaagt ctgttgcaac ttaacggatg gttgtgactc
     4621 ttaggagtgg ttttgaggaa tgaaaggcct tgctggtaat actcctgtta agccatttac
     4681 cacttacctt tactgtgaaa ttctagagag tgttaaatac agattgtcct gccttgcccc
     4741 agacagtcct gtgagatggg ttttgaactt cggttgtgga cactcatact tcagtgtggt
     4801 gtcctctggc ttatacataa ctgtaaaaaa gcttttctga tgctttgaac atagttttgg
     4861 aaggagtttg actttattcc cttgctcatc tcttactgtc acactatttc acaataagat
     4921 ttttgtcatt aaatcatatt ctttattata actaacaatt aagttgatct gtttaaaata
     4981 taaatctact ccagttaaaa ataagctttt caaaaatgta ttatatttat aacaaattta
     5041 ctgtaaatag aataaagaca tactattcac tgtataaatt tattagatgc cttttttaaa
     5101 acctgctttg tgaggacttc atatattctt tatttaaaat aaagtcagac gtgtaca
//
