LOCUS       NM_001109410             745 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 6A
            (Trappc6a), mRNA.
ACCESSION   NM_001109410 XM_001057975 XM_001058031
VERSION     NM_001109410.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Gwynn,B., Smith,R.S., Rowe,L.B., Taylor,B.A. and Peters,L.L.
  TITLE     A mouse TRAPP-related protein is involved in pigmentation
  JOURNAL   Genomics 88 (2), 196-203 (2006)
   PUBMED   16697553
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   3  (bases 1 to 745)
  AUTHORS   Matthews,R.J., Cahir,E.D. and Thomas,M.L.
  TITLE     Identification of an additional member of the
            protein-tyrosine-phosphatase family: evidence for alternative
            splicing in the tyrosine phosphatase domain
  JOURNAL   Proc Natl Acad Sci U S A 87 (12), 4444-4448 (1990)
   PUBMED   2162042
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473979.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001058031.1, XM_001057975.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..745
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /note="trafficking protein particle complex subunit 6A"
                     /db_xref="GeneID:680465"
                     /db_xref="RGD:1591735"
     exon            1..112
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..508
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /note="trafficking protein particle complex 6A"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 6A"
                     /protein_id="NP_001102880.1"
                     /db_xref="GeneID:680465"
                     /db_xref="RGD:1591735"
                     /translation="MADAVLFEFLHTEMVAELWAPDPDPGSGGKKKSLSVLEGLGFRV
                     GQALGERLPRETLAVREELDALKFLCKDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPL
                     LIPMGSGPQYLEEAPKFLAFTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQKS"
     exon            113..180
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /inference="alignment:Splign:2.1.0"
     exon            181..298
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /inference="alignment:Splign:2.1.0"
     exon            299..382
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /inference="alignment:Splign:2.1.0"
     exon            383..476
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /inference="alignment:Splign:2.1.0"
     exon            477..745
                     /gene="Trappc6a"
                     /gene_synonym="RGD1309160"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccaggtgcg aggggcgaga ggtggcgcat ggcggacgca gtactgttcg agtttctgca
       61 caccgagatg gtggcggagc tgtgggcccc agacccggac cctggctcgg ggggaaagaa
      121 gaagagcttg tcagtcctgg agggcctggg cttccgcgtg gggcaggctc tgggtgagag
      181 gctgccccgg gagacgctgg ccgttaggga ggagctagat gccctcaagt tcctgtgcaa
      241 agatctgtgg gcggccatgt tccaaaagca tatggacgga ctccgcacca accaccaggg
      301 gacctatgtg ctgcaggaca acagcttccc cctcctcatc cccatgggct cggggccaca
      361 gtacctagag gaagccccca agttcctggc cttcacctgc ggcctcctgt gcggcgccct
      421 ccatactctg ggcttccaga gcctggtcac tgcctccgtg gcgtccctgc ccgcctgtaa
      481 gttccaggtg gtgatccaga agtcctgagg accccaggtt tgccctgctc taacctcagc
      541 ctcagaatgt ggcatctggc cctgcctcac tgctcacctt tggaggcact cacaggctct
      601 ggggaggtca catgtgcttc cgccaaggaa aggactagga gggtcccggg aggtgggacc
      661 catgagttca gagtgggtat ggagggacgt tagggcatct cccagacatg ttcaataaag
      721 aaaggttctt tatgaggaaa cagac
//
