LOCUS       NM_001003708             863 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 4
            (Trappc4), mRNA.
ACCESSION   NM_001003708 XM_345931
VERSION     NM_001003708.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Van Bergen,N.J., Guo,Y., Al-Deri,N., Lipatova,Z., Stanga,D.,
            Zhao,S., Murtazina,R., Gyurkovska,V., Pehlivan,D., Mitani,T.,
            Gezdirici,A., Antony,J., Collins,F., Willis,M.J.H., Coban
            Akdemir,Z.H., Liu,P., Punetha,J., Hunter,J.V., Jhangiani,S.N.,
            Fatih,J.M., Rosenfeld,J.A., Posey,J.E., Gibbs,R.A., Karaca,E.,
            Massey,S., Ranasinghe,T.G., Sleiman,P., Troedson,C., Lupski,J.R.,
            Sacher,M., Segev,N., Hakonarson,H. and Christodoulou,J.
  TITLE     Deficiencies in vesicular transport mediated by TRAPPC4 are
            associated with severe syndromic intellectual disability
  JOURNAL   Brain 143 (1), 112-130 (2020)
   PUBMED   31794024
  REMARK    Erratum:[Brain. 2020 Mar 1;143(3):e24. doi: 10.1093/brain/awaa007..
            PMID: 32333675]
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
            Sacher,M.
  TITLE     C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
            early stage in ER-to-Golgi trafficking
  JOURNAL   Mol Biol Cell 22 (12), 2083-2093 (2011)
   PUBMED   21525244
REFERENCE   3  (bases 1 to 863)
  AUTHORS   Menon,S., Cai,H., Lu,H., Dong,G., Cai,Y., Reinisch,K. and
            Ferro-Novick,S.
  TITLE     mBET3 is required for the organization of the TRAPP complexes
  JOURNAL   Biochem Biophys Res Commun 350 (3), 669-677 (2006)
   PUBMED   17027922
REFERENCE   4  (bases 1 to 863)
  AUTHORS   Ethell,I.M., Hagihara,K., Miura,Y., Irie,F. and Yamaguchi,Y.
  TITLE     Synbindin, A novel syndecan-2-binding protein in neuronal dendritic
            spines
  JOURNAL   J Cell Biol 151 (1), 53-68 (2000)
   PUBMED   11018053
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY373378.1.
            
            On Aug 30, 2004 this sequence version replaced XM_345931.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY373378.1, BC098628.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785, SAMN16676808
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="W"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q22"
     gene            1..863
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /note="trafficking protein particle complex subunit 4"
                     /db_xref="GeneID:367073"
                     /db_xref="RGD:1302991"
     CDS             1..660
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /note="synbindin; trafficking protein particle complex 4"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 4"
                     /protein_id="NP_001003708.1"
                     /db_xref="GeneID:367073"
                     /db_xref="RGD:1302991"
                     /translation="MAIFSVYVVNKAGGLIYQWDSYSPRAEAEKTFSYPLDLLLKLHD
                     ERVLVAFGQRDGIRVGHAVLAINGMDVNGKYTADGKEVLEYPGNSANYPVSIRFGRPR
                     LTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLAD
                     PRQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEKAGTFGPG
                     S"
     exon            1..175
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /inference="alignment:Splign:2.1.0"
     exon            176..350
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /inference="alignment:Splign:2.1.0"
     exon            351..454
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /inference="alignment:Splign:2.1.0"
     exon            455..581
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /inference="alignment:Splign:2.1.0"
     exon            582..863
                     /gene="Trappc4"
                     /gene_synonym="Sbdn"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcgattt ttagcgtgta cgtggtgaac aaagccggcg gcctgattta ccagtgggac
       61 agctactcgc cacgggctga agctgagaaa actttcagtt acccgctgga cctactgctg
      121 aaactgcacg acgaacgagt gctggtcgct ttcggccagc gagacggcat ccgggtgggc
      181 catgcagtat tagccatcaa tggcatggat gtaaatggca agtacacggc ggacgggaaa
      241 gaagtgctgg agtatccggg taactctgca aattacccgg tttctattcg atttggccgg
      301 ccccgcctta cctccaatga gaagcttatg ctggcctcta tgttccactc gctctttgcc
      361 attggttccc agctatctcc ggaacagggc agttcaggca ttgagatgct ggaaacagac
      421 acgttcaaac tgcactgctt ccaaacactg acagggatca agtttgtggt cctggcagat
      481 cctaggcaag ctggaataga ttctcttctc cgaaaaattt atgaaattta ctcagacttt
      541 gccctcaaga atccattcta ctccttggaa atgcctatca gatgtgagct atttgaccaa
      601 aacctgaagc tagctctcga ggtggcggag aaggctggca cttttggacc tgggtcatag
      661 aatgaacttg gaatggaccc ctaagttctg agacatgctc cagggctttg ctgtttctac
      721 tccagtgagg attcctgcag cggccttgct aatatacttg aaaatggtag aacactgagc
      781 ctggagatgg ggacagatcc tggctcgaat gctgtgtcct ctgcccctct gtatatatca
      841 cagtcctatg tcctactcag tac
//
