LOCUS       XM_002728958            7536 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus trafficking protein particle complex
            subunit 3L (Trappc3l), transcript variant X1, mRNA.
ACCESSION   XM_002728958
VERSION     XM_002728958.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002728958.6.
            
            On Jan 21, 2021 this sequence version replaced XM_002728958.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7536
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7536
                     /gene="Trappc3l"
                     /note="trafficking protein particle complex subunit 3L;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 5 ESTs, 9 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 11 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:100362279"
                     /db_xref="RGD:2318506"
     CDS             906..1451
                     /gene="Trappc3l"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit
                     3-like protein isoform X1"
                     /protein_id="XP_002729004.1"
                     /db_xref="GeneID:100362279"
                     /db_xref="RGD:2318506"
                     /translation="MSRPAHKRPEYHKINKDLFVLTYGALVAQLCKDYEKDEDVNKYL
                     DKMGYSIGTRLVEDFLARSCVRRCHSYSEIIDIIAQVAFKMYLGTTPSVTCHNSSRNE
                     FSLILHKNPLAEFIEELPAGRSALCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDN
                     VTEIGITFLKKVDDKKYRRKK"
ORIGIN      
        1 cagagccctc ccagtgatgt tgaagaacat gaggcaggcc agcctcctct ccaaagggct
       61 gcttctccga tacggagggg tacagctaca gcagcagtac tcgctggcaa ctgcccacat
      121 ttgacctcgt agagcatagc cagcaatcag aagaatcaag gcaggaacca cgagaaaagc
      181 tgaaccataa tagaaatttt ttccaacttg acacggacaa ctgaacgtgt aagaggaaaa
      241 tagttgctgc ccacaaacag tcaaaatcgc tatcaaagag ttgatgcacg gttcacttct
      301 gagcagagaa gacggaatac agttcagatc tgggctcatt gtggaagctc tgacacagcc
      361 agctggtggc cctttctgat ggctagacta ccagctagga ccattttata ggatagcact
      421 ggtttaactg gttgtgtcaa gtaacccaga catccttgta tgtttaaagg attctaagac
      481 tcttctcatg tactttgtga atcctgagct aataaattca caccagatag tagctgggag
      541 agagagagaa gggatctcag ttttgtttga aaagagaact cggagtctca tcaggaatga
      601 ccacagcaca cttgccagac agagtccctc catctttcag tgcaccactt tgcaccacag
      661 aaaatgttaa gcatcagaca gcatggccta agaagcaaag cagagacact cttatctcag
      721 tgacagattc tccagacaaa gcattacaaa acacagagaa atgcaaagag caaaggtagc
      781 atagcacact cctgcatcaa agcaaggaag acctcgctaa gacaaagacc ggagaggact
      841 actgatgtgc atctaagtca cagacggaag gaaggcactg aagatctcct cacccaccag
      901 gagagatgtc tcgtcctgca cacaaaaggc cagaatatca caaaataaac aaagaccttt
      961 ttgtgctcac ctatggagct ctggttgccc agctatgcaa ggattatgaa aaagatgagg
     1021 atgtgaacaa atacttggat aaaatgggtt acagtattgg aacacggctg gtggaagatt
     1081 ttttggctcg atcctgtgtg agaagatgcc atagttattc agaaattatc gatataattg
     1141 cccaggttgc tttcaagatg tacttgggaa ctacaccgag tgtgacctgc cacaattcaa
     1201 gcagaaatga attttccctg attctacaca agaatcctct ggcagagttc atagaagagc
     1261 tgcctgctgg gcgatctgca ctgtgctact gcaacttact ctgtgggatc attcgaggag
     1321 ccctggagat ggttcattta gcggctgatg ttacattctt gcaagacaga ctaaaaggtg
     1381 acaatgtgac agaaattgga ataacatttc tgaaaaaggt ggatgataaa aaatatagac
     1441 ggaaaaaatg aagactagca tgcagagagc cacccactgg ttggctgtcc agtgagtatt
     1501 agctaaacac acacccacag aagttctgta gtagcttcgg caggcttata aatcttgctg
     1561 tgtgtcacac aattttagca atttcagata caagtaactt cttataaaac agtaagcatg
     1621 aattccaccc acatattcaa tccctcctca gccagtctat ccattcagtt acctgtgaca
     1681 ataggaaaag aagaagaagc atcacctata caagctgtta gggccttggc tcttttcaat
     1741 agaaaaaaaa aatgaatgaa atgatacagc attagagaga gacaggcttt agacatagta
     1801 tataacagat atatttgcaa catctctcat agactttatt atgaatgtga ttttattttt
     1861 tacttattgt ctttgcttat tattggggca tattgcttga aggtgcatct ctgtaaattc
     1921 aattgttaat tctgtcctgg cagagagcta aatgctggca ggattctggt attgccgctt
     1981 ttatggctca tttccaagtt tcctaatttg taaatatttg ttcttcctca tttgcctaaa
     2041 gcaatctaga atgtatcaga ggttgtctta ctgctgattg gctataataa atatctggca
     2101 gccaatagct gggcaggagg tgggggagcg gaacttcaga gaggggaatg ctgggagaag
     2161 gtatgagaca cagagatcca gccaattaac tcaggtgaag aaccagaaca gagaggaaca
     2221 gagagcttcc tgcaatgtgg catgtggtag gctagttagt cagattacat ttaaagtagc
     2281 cttagctaaa aacctaaact gtaaaagaat aaaaagcctc tgtgtcacta tatcactggc
     2341 agatccatga aagttctgct gtggcttata acttcaacta ctctctaggt ataacagaga
     2401 gcccaattta tctatctgga tgccaattct gaagcattaa aatttatatc tgattttaat
     2461 tcatttaact ttaaacttta atttctttaa tttggagatg gctagtatca acaaaatatc
     2521 attagtactc atgatatttg gctggtggaa cccttggaga tcaaatccaa gggtcttgca
     2581 tttgcaccag catgccttag ttctcttgaa tatgttctgg gtcctgtagg gtgcccctat
     2641 tagactctgc cttcttttct gtcttgccaa tgtagccatc aaacccacca cattgaaggc
     2701 agttttgcct gatattccca gagacactgc atatagaacc ggtggagcta ccaaaataag
     2761 tatcattcct tgacttttac ctcatcatcc tgtattgaga gcagtatctt ggtattgaat
     2821 ttgtgatatc gaaggtgacc catatactca cagaacggct ttcttgtatt tactgtgttt
     2881 cattctgaag atggtgagac tcttgaaagc cacaaatatt gttccaaata ttccttcttc
     2941 atcccttctt ctttcttttc tttcttcttt aatgatatga cgtgttaccc agtctggcac
     3001 tcaagtcctg atcctactgt ttccactttc caagtgccag gattttgtta tctcagataa
     3061 taagttttac attcctttct gagtctttga aaccaactgt atttaaccca gatcagttca
     3121 atgatcaata gaatttaaag gaaaaataga gtccttgcaa aataatacat tttaattagt
     3181 gttgtttaat ggtttcagtg tttaaaattg gaagccatta agctacactg aaacaaatgc
     3241 cacaatagtt acacagtaag tatttagtaa tggtcttgca gttactgcca cgggctgtac
     3301 aaattcaaag ttgaagattc agtgagttcc tttccactga tctggaaagc cagcaaacaa
     3361 cagattaatc catgccaagt tgtcctcact accactgagg tgacccagag aagcaattaa
     3421 agatggcggc accagtgtcc catttcatcc ctgtaggaag ttccatcgtt tgggggaagg
     3481 gcaatgggaa gttatttggt agagcaacag ggttttattg tatttccatt tcacaaaaac
     3541 tcttcagcct ggtccataaa cgtttattga aacagattct tattggagga aaaaaagaaa
     3601 taaaaaggta aggatattcc tatttgtagt aaaatggagg agagagtttg ttatagaaat
     3661 gtggaagggg gttggggatt tagctcagcg gtagagcgct tgcctagcga gtgcaaggcc
     3721 ctgggttcgg tccccagctc cgaaaaaaaa gaaaaaaaga aaaaaaaaag aaatgtggaa
     3781 gaacatagcc agaggcaggg acatctggga gagcacaaag tgggcgtgac tctgagccat
     3841 gtgaagaaga gtcaaccagg agtatctacg gagcaatcca gtaacagtag agggatgcca
     3901 cacactcatt acacccatgt gtgatctgag gagaaactca gttttcatgg agccaatatg
     3961 tgtcacatta ttattgaaaa cagagccaca actacaacag tgagaaacaa aattttactt
     4021 ttaaaatatt tgaatataaa aagtgttcta acatgggtag cacgtaccag acagctgggc
     4081 tgctctgcat gtggaatcca catcaaagga gagagagtcc aagccaagta aaaagttcta
     4141 aaaccttccc taaaatagtt aagaaataga tgtcatggga tggtttctcg ctttctctaa
     4201 aactcagccc tgtctttcct cattaaattc accactattc aagaggaagg gaggaaagaa
     4261 tggccctcaa atagctaagg ttccagtcag atgaatagaa ggagaatgtg tcctgggaac
     4321 atgaaataaa gttaccaaaa gcagtcatca gaagtgtttg ccaaaaaata aaaaataaaa
     4381 aaataagaag aagaagaaaa agaaaagaaa agaagacttt tccctggaaa aaaaatgaaa
     4441 gaagtaaaaa agaaataaat aaatgaacaa aaaaaatgaa agaagtgttt tctaccacag
     4501 aagactcaaa ataatttgac cagaaaaaaa tgttgaaatg ggtaatgaga ggtctttata
     4561 tgtgactata tcaactaatg ctagattata gcatcttcat aagcaatcac ctcccaatag
     4621 catcactaga tgggagctga accaacaaca cattagcctt ttcagaggat gattcctttc
     4681 caaacagata ataatattgt cccaaagttg taaatatgaa acaaacaaac aaacaaagca
     4741 aacaaagaaa caaaggaaag ggaagggaag agaaaaatga aaaacaaaaa ggaaaaaaaa
     4801 aaggaaaata accccacccc cagagaaatc tatacaaaaa tctggagcca agaagtaaaa
     4861 atagcttaaa gagaatttta ttactggttt atgtggccat gctaagggtg gagtgcagga
     4921 ccttgtactt gctaggcaag agttctacta ctatgctaca tagtcagcca acacagtgac
     4981 aattgttact tctacaagat gcttaaaaac tgagaggcag aggcaggagg atctgagttt
     5041 cacctaggac tagatggatg gatggataga tagatagata gatagataga tagatagata
     5101 gatagataga tagatagata aaacaaaatt aaaagaagac cctaaactgt caggagacac
     5161 ctcccaaact atagctataa ctaagctgtg actatctata gctgcctagg ccattttgca
     5221 tttcagtcag aaagaattcc agctcaaaac aaccttcttt ctacccaacc aacgggtaaa
     5281 aattgccttt taagtttctc taaataccca ttgtgtagag cccctcagga atcattcatt
     5341 ttgaatcaaa atgaatggat gagggacaaa gcccaggggc aattctttac taagaattaa
     5401 attcaccaaa cccagactat gtctatgcat gcctgacaca gctatttcct accaaagatt
     5461 tgtcctttat agtctaaagt aaaatgtatg tatcatggtt gaccaaagtc ttgatttttc
     5521 ttgtacctaa ctttgaaagg caaaaatatt tgtcccaaat ttggcttgga gacaggtgta
     5581 gggaccgcat aattggaaac ttcttcccag ttctgtgatg gaaactttat atggaaaaag
     5641 ctgtaaagat aaatatttag actgaaaaat gatattgggg attatataaa gcatcttgct
     5701 tttttaattg ataaggttat tgtgatgcat gaaagtcctt cctgcatata gtcactactt
     5761 atgttggtca ctgtcgctag gcaaatggct ctctattccc agtctttctg aaaaatggct
     5821 gtatcttgtt aattatggta tgcgggtaga ctaatagtct gctggttttg tttgtttact
     5881 tgtttgcttc taaaagacaa ggtctcacta cataactctg gctatcctat tgtggaactc
     5941 agtctgtagg ctaggctggc ctcaaactca aagaccaatg ggcctgcctc catctcctaa
     6001 gtgctacaat taaacgggtg caccgctaca ctcagtttgt gctttgttaa gatgtgtccc
     6061 acagaaatgt attaaataat tttggaaaac taagacattt gtacttttct tcacattcat
     6121 tcacaggaga gtgaataaat ggtaaagaag agcagaaaca ttaatgtaga tatatgcaca
     6181 tgactattca tttatactaa ttaaaaacaa aagcagtcaa atgtttatca atacattaca
     6241 aaggtacaaa atgggttatg atactactat taaaataatg aataatgtct aattcacagc
     6301 atgatgtgat gatttttatg ttaagtaact aagtaaagca gataaaaata tacattataa
     6361 acagaagatt ttgctcttag agcaggtaga gcgacaccca taaagcagag actgacggag
     6421 ggagattctg ggtacaaacc ttggcctcca cacttgcatg catggaatcg aagcatatac
     6481 atttcctcac acacgcagac accacataca ttcacacaaa agaaacaacc aggaagcagt
     6541 tttggtgaga atgtaaagat atgggctctt actagccttt ggtaagaatg taaatggtgc
     6601 atctgctgta atacacagca acagtagaat tgccttatta tccatctttt taatttctgg
     6661 ttaaatataa aaacagttga aagcagtctt gaaatgatct ctgtgcaccc atgtttatag
     6721 cggcattgct tgtaatagtc aaaatgtagt tagtccaaga gtccatgatg actgatgatg
     6781 gcatgatgac atgatgacaa atgagtgtta aaggtgtatc ttttaataca catgtggact
     6841 tatctacatg gagcttttgc tcaacatgaa aggaagggtg ttctgacaca tgctagcaca
     6901 tggatgaacc ctgaggacgt cagaaggaga tgcaccaagg gaatgctgac agcactgtga
     6961 ttgaatgtag ttctattgaa atgtattctt gaagatggtg aagaatataa atcttatgtt
     7021 atagacattt taccacaatg taaaaactta aaaataatgt gctatgtatc ctcaataaaa
     7081 ggttggttaa ataaacaaga aggcatttaa ggagtattct ggcttttata cagatgttat
     7141 agactcacca tggtgacacc tttatggcat gtgtagaagt gaaatgctat gttttaggat
     7201 gttagagaac tgctctctag ggttctgcaa tggggttcct cggtgtcttt tcctttgaat
     7261 agattctatg taagtgcata tatgtataca ctcgtaagtg gaatgatact gaagacatgc
     7321 ttagagagca tctagtagca aaggaaacag tgtcaccgca gatgagaaaa atgatgtacg
     7381 gatgcttgtt gaagctaaca tgttgaaatg ggacttcatt atatttggag gttggattta
     7441 ttgttatcgt cattattatt gctttgctct tgtttattct caaatctccc ctttaaaaat
     7501 ccttgtcgaa aaatactaaa taatgcctag aaattc
//
