LOCUS       NM_001271112             858 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex 2B
            (Trappc2b), transcript variant 2, mRNA.
ACCESSION   NM_001271112
VERSION     NM_001271112.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CB578129.1, DV717556.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840115, SAMN12840117
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               JAXUCZ010000010.1  36443286-36443432   c
            148-858             JAXUCZ010000010.1  36439185-36439895   c
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..858
                     /gene="Trappc2b"
                     /note="trafficking protein particle complex 2B"
                     /db_xref="GeneID:100910318"
                     /db_xref="RGD:6499350"
     exon            1..147
                     /gene="Trappc2b"
                     /inference="alignment:Splign:2.1.0"
     exon            148..858
                     /gene="Trappc2b"
                     /inference="alignment:Splign:2.1.0"
     CDS             171..593
                     /gene="Trappc2b"
                     /note="trafficking protein particle complex subunit 2;
                     trafficking protein particle complex 2; trafficking
                     protein particle complex subunit 2-like; sedlin-like"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 2B"
                     /protein_id="NP_001258041.1"
                     /db_xref="GeneID:100910318"
                     /db_xref="RGD:6499350"
                     /translation="MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHA
                     ALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDV
                     YDLYIKFAMNPFYEPNSPIRSTAFERKVQFLGKKHLLS"
ORIGIN      
        1 gcgtgtacgc atgctcagtg agcagtctcg actattcgtt gggcgtagct acacctgaga
       61 ctgacgttga gtttgggtaa tggtttgtcc tgttctccac cttgaacacg tctactcctg
      121 aactagaggg aagtcgactt atgtgaggaa ccatacatag atagaatata atgtctggaa
      181 gcttctactt tgtaattgtc ggccaccatg ataatccagt gtttgaaatg gaatttctgc
      241 cagctgggaa gacagaatcc aaagatgagc atcgtcatct gaaccagttc atagctcatg
      301 ctgctctgga cctcgttgac gaaaacatgt ggctctccaa caatatgtac ttaaaaactg
      361 tggacaagtt caatgagtgg tttgtctcgg ccttcgtcac tgctggccac atgaggctca
      421 tcatgcttca cgatgtgagg caagaagatg gaatcaagaa cttcttcact gacgtctacg
      481 atctatacat caagttcgcc atgaatccct tttatgaacc caattctcct attcggtcaa
      541 ctgcatttga aagaaaagtt cagtttcttg ggaagaaaca tcttttaagc taaatgcaga
      601 aaccttcaga atcagagtgg gttatgctca gaagtgtatg tgttgtactc ctcggtaaaa
      661 tagcctggca agctctacat gtctcagctt acctgtatag catgaaattt ctcttctgtt
      721 taaaaacctc atcttttcat gttatcacaa ttagtattta tctgggaaca attgtcacta
      781 atattttatt tcaaaaatta ataagcctat aacttttctg attgagataa ttaaaaaaaa
      841 atcttacatt ccttttaa
//
