LOCUS       NM_001013908            1699 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 13
            (Trappc13), mRNA.
ACCESSION   NM_001013908 XM_215475
VERSION     NM_001013908.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DY312499.1, BC088172.1 and CO397574.1.
            
            On Sep 30, 2011 this sequence version replaced NM_001013908.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088172.1, FQ217190.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-26                DY312499.1         1-26
            27-1037             BC088172.1         1-1011
            1038-1273           CO397574.1         289-524
            1274-1699           BC088172.1         1248-1673
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q13"
     gene            1..1699
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /note="trafficking protein particle complex subunit 13"
                     /db_xref="GeneID:294709"
                     /db_xref="RGD:1306583"
     exon            1..321
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     CDS             276..1532
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /note="UPF0533 protein C5orf44 homolog; trafficking
                     protein particle complex 13"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 13"
                     /protein_id="NP_001013930.2"
                     /db_xref="GeneID:294709"
                     /db_xref="RGD:1306583"
                     /translation="MEVNPPKQEHLLALKVMRLTKPTLFTNIPVTCEEKDLPGDLFNQ
                     LMKDDPSTVNGAEILMLGEMLTLPQNFGNIFLGETFSSYISVHNDSNQVVKDILVKAD
                     LQTSSQRLNLSASNAAVAELKPDCCIDDVIHHEVKEIGTHILVCAVSYTTQGGEKMYF
                     RKFFKFQVLKPLDVKTKFYNAESDLSSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIM
                     YNVTELNSVNQAGECVSTFGSRGYLQPMDTRQYLYCLKPKKEFAEKAGIIKGVTVIGK
                     LDIVWKTNLGERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSS
                     ERTMDLVLEMCNTTSIHWCGISGRQLGKLHPSSSLCLALTLLSSVQGLQSVSGLRLTD
                     TFLKRTYEYDDIAQVCVVSAAVEVEA"
     exon            322..390
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            391..490
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            491..575
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            576..703
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            704..776
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            777..821
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            822..839
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            840..973
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1172
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            1173..1273
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..1424
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
     exon            1425..1680
                     /gene="Trappc13"
                     /gene_synonym="RGD1306583"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttttgggaag ccgcgtattg tcagcccgaa gtggatcgtt gaagtcagcc tgtgtggaaa
       61 atatgtgtat ttctgaacga aggaatggcc ttggtaaaaa gatttcactg gagccgtaaa
      121 ggacttaatg aaaagagaat ttaagttctc aggagcagaa agaagtcgag cgtgcgtttg
      181 aaggccgatc ttccgggact tgtgcctggc acttttcctt ccagacccag tgaaacttca
      241 gcctgtatag gctgaggtca gaagtgccgg tcaaaatgga agtgaatccc cccaaacagg
      301 agcacctgct ggcgctaaaa gtgatgcgat tgaccaaacc tactttgttc accaatattc
      361 ctgtaacttg tgaagagaag gacttacctg gtgatctctt taaccagtta atgaaagatg
      421 atccttcaac tgtaaatggt gcagagattt taatgttggg agaaatgttg actttacccc
      481 aaaatttcgg gaatatattt ctgggagaga ccttttccag ttacatcagt gttcacaacg
      541 acagcaatca agttgtaaaa gatatattgg tgaaggcgga tctccagacg agttctcagc
      601 gtttaaacct ttcagcctcc aatgctgctg tggctgaact taaacctgat tgttgtattg
      661 atgatgtcat acaccacgaa gtaaaggaaa ttgggacgca catcttggtg tgtgctgtga
      721 gttacacaac tcagggtgga gaaaaaatgt actttagaaa attcttcaaa tttcaggttc
      781 tcaaaccatt ggatgtgaaa accaaatttt acaatgcaga gagtgacctc agttctgtga
      841 ctgatgaagt atttcttgaa gcccaaattc agaatataac aacctcacca atgtttatgg
      901 agaaagtttc cctggagcca tcaataatgt acaatgtaac agaattgaat tcagtgaacc
      961 aagctggaga atgcgtatct acatttgggt ccagaggata tttgcagcca atggatacac
     1021 gccaatactt gtactgccta aagcccaaga aagaatttgc agaaaaagcc ggcatcatta
     1081 agggagtgac agtaatcggg aaactggata tagtgtggaa aacaaatctg ggtgaaaggg
     1141 gccgactaca gaccagccag cttcaaagga tggctccagg ttatggagat gttaggctgt
     1201 ctttagaggc catcccagat accgtaaacc tagaagaacc tttccacatt acctgtaaaa
     1261 tcacaaactg cagcagtgag aggacgatgg acctagtgct ggagatgtgc aacaccacct
     1321 ctatccactg gtgtgggatt tcgggaagac agctggggaa gctgcacccc agctcctcgc
     1381 tctgcctggc cctgactctc ctgtcctcag tacaggggct ccaaagcgtg tctggcttaa
     1441 gactcacgga cacattttta aaaagaacat atgaatatga tgacattgca caagtctgcg
     1501 tggtctcagc tgctgtggaa gtggaagcct gaagaaattt cctaatgtca aacttgttta
     1561 atcacagaat gctctccgta ttttgtcagc tttgtgcaac gatcagtaat gaaaataagt
     1621 atatgttatt taaatttgtt tcctgtaaaa cagttaaata ttaaatgttt gttgtaaaaa
     1681 aaaaaaaaaa aaaaaaaaa
//
