LOCUS       NM_001398781            3189 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 12
            (Trappc12), mRNA.
ACCESSION   NM_001398781 XM_234029
VERSION     NM_001398781.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Milev,M.P., Hasaj,B., Saint-Dic,D., Snounou,S., Zhao,Q. and
            Sacher,M.
  TITLE     TRAMM/TrappC12 plays a role in chromosome congression, kinetochore
            stability, and CENP-E recruitment
  JOURNAL   J Cell Biol 209 (2), 221-234 (2015)
   PUBMED   25918224
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
            Sacher,M.
  TITLE     C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
            early stage in ER-to-Golgi trafficking
  JOURNAL   Mol Biol Cell 22 (12), 2083-2093 (2011)
   PUBMED   21525244
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 23, 2021 this sequence version replaced XM_234029.10.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.1163801.1,
                                           SRR26360172.700861.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-103               JAXUCZ010000006.1  51115195-51115297   c
            104-1341            JAXUCZ010000006.1  51111610-51112847   c
            1342-1458           JAXUCZ010000006.1  51103172-51103288   c
            1459-1572           JAXUCZ010000006.1  51082370-51082483   c
            1573-1711           JAXUCZ010000006.1  51080671-51080809   c
            1712-1824           JAXUCZ010000006.1  51070975-51071087   c
            1825-1897           JAXUCZ010000006.1  51062723-51062795   c
            1898-1971           JAXUCZ010000006.1  51060799-51060872   c
            1972-2070           JAXUCZ010000006.1  51056305-51056403   c
            2071-2171           JAXUCZ010000006.1  51051818-51051918   c
            2172-2259           JAXUCZ010000006.1  51051008-51051095   c
            2260-3189           JAXUCZ010000006.1  51049878-51050807   c
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q16"
     gene            1..3189
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /note="trafficking protein particle complex subunit 12"
                     /db_xref="GeneID:314013"
                     /db_xref="RGD:1566054"
     exon            1..103
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            104..1341
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     CDS             109..2502
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /note="tetratricopeptide repeat domain 15; trafficking
                     protein particle complex 12"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 12"
                     /protein_id="NP_001385710.1"
                     /db_xref="GeneID:314013"
                     /db_xref="RGD:1566054"
                     /translation="METAKDGEQSPSEASPPTQAGPETISEPVPLEEEGQPLYHEETI
                     DLGGDDFASEETEPTSEGSHNFGDKLNEHMMESVLISDSPNNSEGDVGDLGCLQDVGE
                     PPRGATDHRLPDSTDKEVVDTLSNGSETDGDDTPRDISDMTPDSRASLKEDSTQEDVP
                     AMPALENAGTEEVGPKDSLVPREEQTSEVSSSQSSSKDEPLPVCTIFSQATSTSSQPH
                     LFLQDGFESQMVKSPSFSSTSETSAKTPPPMVQPSPSLSTFFGDTMSSNSLASDFFDS
                     FTTSTFISVSNPNAGSPVPEKLASLTAPVGEKSPDSTSPSYSTRMDRSESGVSRAALD
                     VPESPKPFSQIQAVFAGSDDPFATALSMSEMDRRNDAWLPSQATREVLMSVATQQYGT
                     VFIDKENLTMPGLKFDNIQGDAVKDLMLRFLGEKAAAKRQVLNASSVEQSFVGLKQLI
                     SCRNWRAAVDLCGRLLTAHGQGYGKSGLPTNHTTDSLQLWFVRLALLVKLGLFQNAEM
                     EFEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHRV
                     KTVCSKILANLEQGLAEDGGLSSVTQESRQASVQLWRSRLGRVLYSMANCLLLMKDYV
                     LAVNAYLTVIKYYPEQEPQLLSGIGRILLQIGDIKTAEKYFQDVEKVTQKLDGLQGKI
                     MVLMNRAFLYLGQNNFAEAHKFFTEILRMDPTNAVANNNAAVCLLYLGKLKDSLRQLE
                     AMVQQDPRHYLHESVLFNLTTMYELESSRSMQKKQSLLEAVASKEGDSFNTQCLKLA"
     exon            1342..1458
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..1572
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            1573..1711
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            1712..1824
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            1825..1897
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..1971
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            1972..2070
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            2071..2171
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            2172..2259
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
     exon            2260..3189
                     /gene="Trappc12"
                     /gene_synonym="RGD1566054; Ttc15"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcacaagtgc gggaccttgg atcttgagtt tatttcccgt cttccgtcag ctcttcggac
       61 ccttttcgcc tgtgggtgaa cggacctcag gggcgggtgg cagacaacat ggaaacagct
      121 aaggatggtg agcagagccc aagtgaggca tctcctccaa cccaggccgg tcctgaaacc
      181 atctcagagc ctgtgcctct ggaggaggag ggtcagccgc tgtaccatga ggagaccatt
      241 gatctcggtg gagatgactt tgcgtctgaa gagacggagc ccacatccga aggttctcac
      301 aacttcggag ataagcttaa tgaacacatg atggagagcg tgctcatctc tgactctccg
      361 aacaacagcg agggtgatgt gggcgacctc ggctgtctgc aggatgtcgg ggagccgccc
      421 agaggtgcca ccgaccacag actgcccgat agcacggaca aagaagtggt ggacaccctg
      481 agtaatggca gtgagaccga tggagacgat actcccagag acatctcaga catgacccct
      541 gatagcagag cctccctgaa ggaagactca acccaggaag atgtgccggc catgcctgca
      601 ctggagaatg ctggcacgga ggaagtgggg cctaaagaca gccttgtgcc ccgagaagag
      661 cagacctcag aagtgtcctc cagtcagtcc tcctccaaag acgagccctt gcctgtctgc
      721 accatcttca gccaggccac ctccacttcc tcccagccac acttgtttct acaagatggc
      781 ttcgagtccc agatggtgaa atcgcccagt ttcagtagca ccagcgagac atcagccaag
      841 acccctcctc ccatggtcca gcccagtccc agcctgagta catttttcgg agatacaatg
      901 agctctaatt ccttggcctc tgatttcttt gattccttca caacttctac tttcatttcg
      961 gtcagtaatc ccaacgctgg ttccccggtc ccagaaaagc tggcttcact cactgcccct
     1021 gtaggggaaa agtcacccga ttccaccagc ccatcttact ctacaaggat ggatagatcg
     1081 gaatctggtg tctctcgggc cgctctggat gtccctgaat ctccaaagcc attctcacag
     1141 atccaggctg tgtttgctgg gagcgatgac cccttcgcca cagccctgag catgagcgag
     1201 atggaccgga ggaatgacgc atggcttccc agtcaggcaa ccagagaagt cctgatgtca
     1261 gtagcaaccc agcagtatgg caccgtgttc atagacaagg agaacctcac tatgcccggc
     1321 ctcaagtttg acaacattca gggagatgca gttaaagact tgatgcttcg cttcctgggt
     1381 gagaaggctg cagcaaagag gcaagtctta aatgccagct cggtggaaca gtcctttgtg
     1441 gggctgaagc agctcatcag ctgcaggaac tggagggcgg cagtcgacct gtgtggacgc
     1501 ctgctcacag cccacggaca aggctatggc aagagtgggc tgcctaccaa ccacaccaca
     1561 gactccttgc agctctggtt tgtgaggctg gcgctgctgg tgaagttggg ccttttccag
     1621 aatgccgaga tggaatttga accctttgga aatctggatc agccagacct ctattatgaa
     1681 tactacccac acgtgtaccc aggacgcagg ggctccatgg tccccttttc gatgcgtatt
     1741 ctgcatgcag aactgcagca gtatctgggg aacccacagg agtccctgga ccgattacac
     1801 agggtcaaga ccgtctgcag caagatcctg gccaacttgg agcaaggctt agctgaagac
     1861 ggtggtctga gcagtgtcac ccaggaaagc aggcaagcct ctgttcagct gtggaggtct
     1921 cgtctgggcc gagtgctgta ctccatggca aactgtctgc tcctgatgaa ggactatgtg
     1981 ctggctgtaa acgcttacct cacagtaatc aagtactacc cggagcagga gccacagctg
     2041 ctgagtggaa ttggccgcat tctcctccag attggagaca taaaaacagc tgaaaaatat
     2101 tttcaagacg ttgagaaagt aactcagaag ttggatggac tacagggtaa aataatggtt
     2161 ttaatgaaca gagcctttct gtaccttggc cagaataact ttgcagaagc tcacaagttc
     2221 ttcacagaga ttttgaggat ggacccgaca aatgcagtgg ccaacaacaa tgctgctgtg
     2281 tgtctgcttt acctggggaa gctcaaggac tccctgcggc agctggaggc catggtgcag
     2341 caggacccca ggcactacct gcacgagagc gtgctcttca acctgaccac catgtatgag
     2401 ctggagtcct caaggagcat gcagaagaag cagagcctac ttgaggccgt tgccagcaaa
     2461 gaaggggaca gcttcaacac gcagtgcctg aagctggcct agttccctcc aggtctctgt
     2521 actctgtaga cacttgagaa ggtggatcag taaaagcact tgatgggtgt gcaggaacat
     2581 gccttaggct gggctagtct cagacccact gaccggccta ccatgcagtt ccacaacact
     2641 gcccgttggt ggaggtgggc tatatgcctg gcattcagaa caggaaacac aagaacctgg
     2701 gttctttggt ttgttcatgg acgttaactg ctcctttgtc acttctgaat acttggctgg
     2761 tatatatata atattgcctg ttctcactat cattttcttc cttcctccat atcctaaacc
     2821 aaagcatcac gctgcctact cagctcactc agaacacagc tgggcaagaa gtgtcacagg
     2881 ctggcacagc atctatgtgt tctgtgtgcc tggaaggcag agcggcgcaa cacttgtacg
     2941 ctttgtctac tttgcaaaat gtgaaggacc tgaagatggt ttggggtacc cagctttcct
     3001 agttcatgtg actcataaac actcatttta aaggcaggat acacaactgt gggatgcagc
     3061 agggcacaat ttgtgcctcg catgctgaga gcctgggctc caccataaca acataaacaa
     3121 aatgtctgtg gcacacaaca aaactactgt ctcttcattt ctgaataaag tggagagtcc
     3181 ttggtgtta
//
