LOCUS       NM_001169115            4470 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus trafficking protein particle complex subunit 11
            (Trappc11), mRNA.
ACCESSION   NM_001169115 XM_001059837 XM_224848
VERSION     NM_001169115.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4470)
  AUTHORS   Matalonga,L., Bravo,M., Serra-Peinado,C., Garcia-Pelegri,E.,
            Ugarteburu,O., Vidal,S., Llambrich,M., Quintana,E.,
            Fuster-Jorge,P., Gonzalez-Bravo,M.N., Beltran,S., Dopazo,J.,
            Garcia-Garcia,F., Foulquier,F., Matthijs,G., Mills,P., Ribes,A.,
            Egea,G., Briones,P., Tort,F. and Giros,M.
  TITLE     Mutations in TRAPPC11 are associated with a congenital disorder of
            glycosylation
  JOURNAL   Hum Mutat 38 (2), 148-151 (2017)
   PUBMED   27862579
REFERENCE   2  (bases 1 to 4470)
  AUTHORS   Scrivens,P.J., Noueihed,B., Shahrzad,N., Hul,S., Brunet,S. and
            Sacher,M.
  TITLE     C4orf41 and TTC-15 are mammalian TRAPP components with a role at an
            early stage in ER-to-Golgi trafficking
  JOURNAL   Mol Biol Cell 22 (12), 2083-2093 (2011)
   PUBMED   21525244
REFERENCE   3  (bases 1 to 4470)
  AUTHORS   Wendler,F., Gillingham,A.K., Sinka,R., Rosa-Ferreira,C.,
            Gordon,D.E., Franch-Marro,X., Peden,A.A., Vincent,J.P. and Munro,S.
  TITLE     A genome-wide RNA interference screen identifies two novel
            components of the metazoan secretory pathway
  JOURNAL   EMBO J 29 (2), 304-314 (2010)
   PUBMED   19942856
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On or before Dec 16, 2009 this sequence version replaced
            XM_224848.4, XM_001059837.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.2156962.1,
                                           SRR26360194.1013575.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-249               JAXUCZ010000016.1  51465855-51466103
            250-475             JAXUCZ010000016.1  51468525-51468750
            476-645             JAXUCZ010000016.1  51469727-51469896
            646-716             JAXUCZ010000016.1  51471395-51471465
            717-831             JAXUCZ010000016.1  51472382-51472496
            832-931             JAXUCZ010000016.1  51474509-51474608
            932-1005            JAXUCZ010000016.1  51474929-51475002
            1006-1102           JAXUCZ010000016.1  51476160-51476256
            1103-1236           JAXUCZ010000016.1  51479137-51479270
            1237-1384           JAXUCZ010000016.1  51482503-51482650
            1385-1478           JAXUCZ010000016.1  51484355-51484448
            1479-1558           JAXUCZ010000016.1  51485082-51485161
            1559-1637           JAXUCZ010000016.1  51485253-51485331
            1638-1692           JAXUCZ010000016.1  51485407-51485461
            1693-1838           JAXUCZ010000016.1  51485783-51485928
            1839-1900           JAXUCZ010000016.1  51486558-51486619
            1901-2033           JAXUCZ010000016.1  51486712-51486844
            2034-2164           JAXUCZ010000016.1  51488067-51488197
            2165-2320           JAXUCZ010000016.1  51489459-51489614
            2321-2508           JAXUCZ010000016.1  51491364-51491551
            2509-2657           JAXUCZ010000016.1  51491656-51491804
            2658-2779           JAXUCZ010000016.1  51493681-51493802
            2780-2899           JAXUCZ010000016.1  51494267-51494386
            2900-2965           JAXUCZ010000016.1  51495963-51496028
            2966-3122           JAXUCZ010000016.1  51496130-51496286
            3123-3234           JAXUCZ010000016.1  51499050-51499161
            3235-3326           JAXUCZ010000016.1  51501705-51501796
            3327-3460           JAXUCZ010000016.1  51503483-51503616
            3461-3628           JAXUCZ010000016.1  51505867-51506034
            3629-4470           JAXUCZ010000016.1  51511162-51512003
FEATURES             Location/Qualifiers
     source          1..4470
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16q11"
     gene            1..4470
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /note="trafficking protein particle complex subunit 11"
                     /db_xref="GeneID:290746"
                     /db_xref="RGD:1309765"
     exon            1..249
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            250..475
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     CDS             272..3673
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /note="trafficking protein particle complex 11"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 11"
                     /protein_id="NP_001162586.1"
                     /db_xref="GeneID:290746"
                     /db_xref="RGD:1309765"
                     /translation="MSPTQWDFPVELCCRPMAFVTLTGLDVVYNAVHRAVWDAFCANR
                     RADRVPISFKVLPGDHEYPKCRSKRTSYEWYIPKGILKTGWMNKHLNLVPALVVVFYE
                     LDWDEPQWKEKQSECATRVEIVRQSLQGRNTKVAVVLIQKKTPLPPGEDIIASERAAA
                     LCNVCELSGKSLFVLPHTDHLVGYIIRLENAFYEHAQTYYYTEIRRVKSHKEFLNKTT
                     HQLLFVRHQFKIAFFSELKQDTQNALKNYRTAYNLVHELRAHETNILEIKTMAGFINY
                     KICRLCFQHNTPLDAIAQFRKHIDLCKKKIGSAELSFEHAAWMSKQFQAFGDLFDEAI
                     KLGLTAIQTQNPGFYYQQAAYYAQERKQHAKALCNHDAAVVYPSPDPLETPTGVLDFY
                     GQRPWRQGILSFDLSDPEKEKAGILAIQLKERSVVHSEMIITLLSNAVAQFKKYKCPR
                     MKSHLMVQMGEEYYYAKDYTKALKLLDYVMCDYRSEAWWTLLTSILTTALKCSYLMAQ
                     LKDYITYSLELLGRASTLKDDQKSRIEKNLMNVLMNESPDPEPDCDALAVKTAQKLWA
                     DRVSLAGSNVFTIGVQDFVPFVQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKL
                     CVSFNNQGYNQFCVLEEASKASEVLENLTQGKMCLVPGKTRKLLFKFVAKTEDVGKKI
                     EITSVDLFLGSESGRCVVLSWQGGGGDAASSQEALQAARSFKRRPKLPDDEVHWDSII
                     VQASTMIISRVPNISVHLRHEPPALMNEMYCLVVTVQSQEKSQIRDVKLTAGLKPGQD
                     ANLTQKTHVTLHGAELCDESYPALLTDIPVGDLNPGEQLEKTVYVRCGTVGSRMFLVY
                     VSYLINTTVEGKGIMCKCHKDETVTIETVFPFDVAVRFVSTKFEHLERVYADIPFLLM
                     TDILSASPWALTIVSSELQLAPSMAAMDHLESQIDKVVLQTGESASECFCLRCPSAGN
                     LEGGVATGHYIISWKRSSGMENIPAISTIITLPHVIVENIPLHVNADLPSFGRVRESL
                     PVRYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTKQEMLYNFYPLMAGYQ
                     QLPSLNINLLRFPNFTNQLLRRFIPTSIFVKPQGRLLEDTSIAAA"
     exon            476..645
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            646..716
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            717..831
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            832..931
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1005
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1102
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1103..1236
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1384
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1385..1478
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1479..1558
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1559..1637
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1638..1692
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1693..1838
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1839..1900
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            1901..2033
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2034..2164
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2165..2320
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2321..2508
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2509..2657
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2658..2779
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2780..2899
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2900..2965
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            2966..3122
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            3123..3234
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            3235..3326
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            3327..3460
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            3461..3628
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
     exon            3629..4470
                     /gene="Trappc11"
                     /gene_synonym="RGD1309765"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggaacacc ttcctaacaa gaaaccccgt tctattccag gactggtgtg cggtactgtc
       61 actcaagccc aggaagtgct tcctgtgcca acggaggcgg ggaaaaggaa gtctcgcctt
      121 ctgccgcccg gtctggggct ggggctgtcg gttgtcggtg gccgtgttcc tagacgcccc
      181 tccctgactc tcctggctct ttcggggccg acggagactc gccgcggctg cagcgggtcc
      241 agggcctgga gttttctgtg acgtcttaaa catgagcccc acacagtggg acttccctgt
      301 ggagttatgt tgccggccta tggcttttgt tacacttact ggccttgatg tggtgtataa
      361 tgctgtccat cgagcagtct gggatgcttt ctgtgccaat cggagagctg accgggtacc
      421 aatttctttc aaagtgctcc caggtgacca tgaataccca aaatgtagat caaagagaac
      481 ttcgtatgag tggtacattc ctaaaggaat cctaaagacc ggctggatga ataagcatct
      541 gaacctcgtg ccagcgctgg tggtcgtgtt ctatgaactg gactgggacg agcctcagtg
      601 gaaggaaaag caatctgagt gtgccaccag ggtggagatt gtcaggcaaa gtttgcaagg
      661 gagaaacaca aaagttgcag tcgtcctgat tcaaaagaaa acacctttac ccccagggga
      721 agatatcatt gcttctgagc gggctgcagc tttatgcaat gtgtgtgagc tctcaggcaa
      781 gtctctgttc gtgctgcccc acactgacca ccttgtgggc tacattataa gattagaaaa
      841 tgcattttat gagcatgccc agacctatta ctacactgag atcagaagag tgaaatctca
      901 taaggaattc ttgaataaaa caacacacca gcttttgttt gttagacatc agttcaaaat
      961 agctttcttc agtgagttga aacaagatac acaaaacgcc ctgaagaatt acaggactgc
     1021 ctataacctc gtacatgaac tgagggccca tgaaactaat attctggaaa ttaagacgat
     1081 ggcaggattt ataaactaca agatctgtag gctgtgtttt caacacaata ccccactaga
     1141 tgccattgct cagtttcgaa aacacattga cttgtgcaag aagaaaattg ggagcgcaga
     1201 gctgtccttt gagcatgctg cgtggatgtc gaaacaattc caggcctttg gagatttatt
     1261 tgatgaagcc attaagttgg ggctgacagc aattcaaaca cagaaccctg gtttctacta
     1321 tcagcaggct gcttactatg cccaggagcg aaaacagcac gcaaaagccc tctgtaacca
     1381 tgacgctgct gtggtgtacc ccagtcctga tcccttggaa acaccaacag gtgttcttga
     1441 cttctatgga cagaggccct ggagacaagg aatactaagc tttgacctct cagaccctga
     1501 aaaagagaaa gcagggattc tcgccattca gctgaaggag agaagtgttg tccactccga
     1561 gatgataatc actcttctga gcaatgccgt tgcacagttc aagaagtaca agtgtccacg
     1621 gatgaagagc cacctcatgg ttcagatggg agaggagtat tattatgcga aggactatac
     1681 caaagctttg aagctgctgg actatgtgat gtgtgactac cggagtgaag catggtggac
     1741 tctcctcaca tctatattga caacagccct gaagtgttcc tacctcatgg cccagttaaa
     1801 agattatatt acttactctc tggaactcct tggaagagct tcaactctga aagatgacca
     1861 gaaatctcgg atagaaaaga acctcatgaa tgttttaatg aatgaaagtc ctgaccctga
     1921 acctgactgt gacgccttag cagtaaagac tgctcagaag ctgtgggcag accgggtctc
     1981 tctggctggc agcaatgttt tcacaatagg cgtacaggac ttcgtgccat ttgtgcagtg
     2041 caaagccaag ttccatgctc ccagttttca cgtggatgtt cctgtccagt ttgatgttta
     2101 tctgaaggcc gactgcccac accccattag gttttccaag ctctgtgtca gctttaataa
     2161 tcagggttac aaccagttct gtgtattgga ggaagcatca aaggcaagtg aagtcttaga
     2221 aaatctgact caaggaaaga tgtgcttagt tcctggcaaa acaagaaaat tgttatttaa
     2281 atttgttgcc aaaactgaag atgtgggaaa gaaaatagag atcacctctg tggatctgtt
     2341 tctgggcagc gagtcaggca ggtgtgtggt tttgagctgg caaggaggag gaggggatgc
     2401 tgcttcctcc caggaagccc tgcaggctgc aaggtctttc aagaggcggc caaagcttcc
     2461 ggacgatgag gttcactggg acagcatcat agtccaggca agcacaatga tcatttccag
     2521 agttccaaac atttctgtac atctgcgaca tgagcctcct gctctaatga atgagatgta
     2581 ttgtttggtt gtaactgttc aatcccagga aaagtcccaa atcagggacg tgaagctcac
     2641 tgctggccta aagccagggc aggatgccaa cctgactcag aagacccatg tgacacttca
     2701 cggagcagag ctgtgtgatg agtcctaccc agccttactc accgacattc ctgtaggaga
     2761 cttaaaccca ggggagcagc tggagaaaac agtgtatgtt cgctgtggaa cagtgggttc
     2821 cagaatgttc cttgtgtatg tttcttacct gatcaataca actgttgaag gaaaaggaat
     2881 tatgtgcaag tgtcacaagg atgaaacagt gacaatagaa actgtctttc catttgatgt
     2941 cgcagtcaga tttgtttcca caaagtttga gcacctggaa agagtctatg cagatatccc
     3001 ctttttgttg atgacggata ttttaagtgc ctcaccttgg gccctcacaa tcgtgtccag
     3061 tgagctacag cttgctccgt ctatggctgc aatggatcat ctggagtccc aaatagacaa
     3121 agttgtctta cagacaggag agagcgctag tgagtgcttc tgtcttcgct gcccatctgc
     3181 tgggaacctt gaaggtggag tggcaacagg acattacatt atctcctgga agaggtcctc
     3241 aggcatggaa aacatccccg ccatcagcac catcatcaca ctgcctcacg tgattgttga
     3301 aaacatccct ctccatgtga acgcagacct gccctcgttt ggacgagtca gagagtcgtt
     3361 acctgtcagg tatcacctac agaataagac cgacttggtt caagatgtgg aaatttctgt
     3421 ggagcccagt gatgccttca tgttctcagg cctcaaacag atccgattac gtattctacc
     3481 tggcaccaaa caggagatgc tatataattt ctatcctctg atggctgggt accaacagct
     3541 accatcgctc aacatcaacc tgctgaggtt tcccaacttc accaaccagc tgctcagacg
     3601 cttcatacca accagcattt ttgtgaagcc acagggtcga ctcttggagg acacctccat
     3661 cgctgctgca tgatgtccag gaccagctct tggtgttctt acggaggagt caagagagta
     3721 cccgggaggt gtactgtgac tgtagctttg ttcgtggtga aaagttaatc ctgcctgttt
     3781 tttaatggac ataatatcag ctcttcagag aactcatggt taaaatattg aggaaatcaa
     3841 cttctctagt tttactaata aagtttgaaa tgtgtcagtg tgatgtgaaa ggtgtcaggt
     3901 catcattgct gttagaagtc ctttcatggt tagcacaatg tgccttgaca tacagcatca
     3961 gtagaacaga gaccaagtgt ggctgacaga ggagacacaa ctcatccggg tctgcctgca
     4021 agtgacccac cccataagtc ccctgtgtgc ttagcgcata cacagcaagt agcacaggtc
     4081 tggctgaagg acagaccttt aggggagggg cttcattaga gcagttgaaa ggtgtaagag
     4141 ttttacttac tgttggaaag tttcagacta cgacccacac atgcttttgt gtgcatcctg
     4201 agaggacctg atgataggct taattagtaa acgaaaagtc tgtgagaatg aaacattgga
     4261 gtgttcagtc ccattacgtc acttcctaag ggcgatcgat ttagaatgac ctttaagttc
     4321 atgtaaatgg aaacagatca tatggtgaac attttctttg taaaatatct taatttaaaa
     4381 ctacataatt tcttggaaat ttgtactatg cagactgcgg gcatattgta aaaaggaaat
     4441 agtgatgtaa ataaaatatg ttctctttca
//
