LOCUS       NM_001408872             743 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus tumor rejection antigen P1A (Trap1a), mRNA.
ACCESSION   NM_001408872 XM_017602221
VERSION     NM_001408872.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000021.1.
            
            On Jun 29, 2022 this sequence version replaced XM_017602221.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.32967.1,
                                           SRR26360181.884727.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-562               JAXUCZ010000021.1  107724142-107724703
            563-743             JAXUCZ010000021.1  107729173-107729353
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..743
                     /gene="Trap1a"
                     /note="tumor rejection antigen P1A"
                     /db_xref="GeneID:680619"
                     /db_xref="RGD:1589457"
     exon            1..562
                     /gene="Trap1a"
                     /inference="alignment:Splign:2.1.0"
     CDS             157..732
                     /gene="Trap1a"
                     /note="tumor rejection antigen P815A-like"
                     /codon_start=1
                     /product="tumor rejection antigen P1A"
                     /protein_id="NP_001395801.1"
                     /db_xref="GeneID:680619"
                     /db_xref="RGD:1589457"
                     /translation="MSDNNKPDKAHNGSGGEGDGNRSNLFDRHSLEEVMPYLEWLILI
                     VATTGFLAFQLIVDAIYEEQYERDVAWIARQSKCRSPLDEDEDDEDGDDDDFYDDDDD
                     EELENLMDDESEDEMGMEMSAGATCVFDLGTCTVHSKATMCCGCENADEEVAMEEEEE
                     EEEEDDDDDDDDEIENLDGDPKNNLDFADGP"
     exon            563..743
                     /gene="Trap1a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggaggaag gagggaggac cccccacctt tgctctccca gcatgcattg tgtaatcgcc
       61 atagccctga gcaggtcgaa ggggtgggtt tctcgcttgc gactctctgc agttatcttc
      121 acttagtaca gctcccagtt ggtgttcttt tgtgccatgt ctgataacaa taagccagac
      181 aaggctcaca atggctcagg tggtgaaggt gatggaaata ggtccaattt attcgaccgg
      241 cactccctgg aagaagttat gccttatctg gagtggctta tcttaattgt cgccacgaca
      301 ggttttctgg cgttccagtt aatcgtagat gccatttatg aggagcagta tgaaagggat
      361 gtggcctgga ttgccaggca aagcaagtgc aggtcccctc tcgatgagga tgaagacgat
      421 gaagatggcg acgacgatga cttctatgac gatgatgatg atgaggaatt ggagaaccta
      481 atggatgatg aatcagaaga tgagatgggc atggaaatga gtgctggagc tacctgcgtc
      541 tttgacttag gtacctgtac agtgcactct aaggcaacca tgtgctgtgg gtgtgaaaat
      601 gctgatgaag aggttgcaat ggaggaagag gaggaggagg aggaagaaga tgatgacgat
      661 gatgatgacg atgaaattga aaacctggat ggagatccta aaaataatct ggactttgca
      721 gatggcccct aatcttaggg atg
//
