LOCUS       NM_001012204            2287 bp    mRNA    linear   ROD 10-FEB-2025
DEFINITION  Rattus norvegicus TRAF3 interacting protein 1 (Traf3ip1), mRNA.
ACCESSION   NM_001012204 XM_343628
VERSION     NM_001012204.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Bizet,A.A., Becker-Heck,A., Ryan,R., Weber,K., Filhol,E., Krug,P.,
            Halbritter,J., Delous,M., Lasbennes,M.C., Linghu,B., Oakeley,E.J.,
            Zarhrate,M., Nitschke,P., Garfa-Traore,M., Serluca,F., Yang,F.,
            Bouwmeester,T., Pinson,L., Cassuto,E., Dubot,P., Elshakhs,N.A.S.,
            Sahel,J.A., Salomon,R., Drummond,I.A., Gubler,M.C., Antignac,C.,
            Chibout,S., Szustakowski,J.D., Hildebrandt,F., Lorentzen,E.,
            Sailer,A.W., Benmerah,A., Saint-Mezard,P. and Saunier,S.
  TITLE     Mutations in TRAF3IP1/IFT54 reveal a new role for IFT proteins in
            microtubule stabilization
  JOURNAL   Nat Commun 6, 8666 (2015)
   PUBMED   26487268
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Liew,G.M., Ye,F., Nager,A.R., Murphy,J.P., Lee,J.S., Aguiar,M.,
            Breslow,D.K., Gygi,S.P. and Nachury,M.V.
  TITLE     The intraflagellar transport protein IFT27 promotes BBSome exit
            from cilia through the GTPase ARL6/BBS3
  JOURNAL   Dev Cell 31 (3), 265-278 (2014)
   PUBMED   25443296
REFERENCE   3  (bases 1 to 2287)
  AUTHORS   Ishikawa,H., Ide,T., Yagi,T., Jiang,X., Hirono,M., Sasaki,H.,
            Yanagisawa,H., Wemmer,K.A., Stainier,D.Y., Qin,H., Kamiya,R. and
            Marshall,W.F.
  TITLE     TTC26/DYF13 is an intraflagellar transport protein required for
            transport of motility-related proteins into flagella
  JOURNAL   Elife 3, e01566 (2014)
   PUBMED   24596149
  REMARK    Erratum:[Elife. 2014 Apr 01;3:e02897. doi: 10.7554/eLife.02897..
            PMID: 24692455]
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 2287)
  AUTHORS   Ng,M.H., Ho,T.H., Kok,K.H., Siu,K.L., Li,J. and Jin,D.Y.
  TITLE     MIP-T3 is a negative regulator of innate type I IFN response
  JOURNAL   J Immunol 187 (12), 6473-6482 (2011)
   PUBMED   22079989
REFERENCE   5  (bases 1 to 2287)
  AUTHORS   Berbari,N.F., Kin,N.W., Sharma,N., Michaud,E.J., Kesterson,R.A. and
            Yoder,B.K.
  TITLE     Mutations in Traf3ip1 reveal defects in ciliogenesis, embryonic
            development, and altered cell size regulation
  JOURNAL   Dev Biol 360 (1), 66-76 (2011)
   PUBMED   21945076
REFERENCE   6  (bases 1 to 2287)
  AUTHORS   Follit,J.A., Xu,F., Keady,B.T. and Pazour,G.J.
  TITLE     Characterization of mouse IFT complex B
  JOURNAL   Cell Motil Cytoskeleton 66 (8), 457-468 (2009)
   PUBMED   19253336
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC083645.1.
            
            On Feb 11, 2005 this sequence version replaced XM_343628.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083645.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132264
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q36"
     gene            1..2287
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /note="TRAF3 interacting protein 1"
                     /db_xref="GeneID:363286"
                     /db_xref="RGD:1309252"
     exon            1..242
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..2081
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /note="intraflagellar transport protein 54 homolog;
                     microtubule-interacting protein associated with TRAF3; TNF
                     receptor-associated factor 3 interacting protein 1"
                     /codon_start=1
                     /product="TRAF3-interacting protein 1"
                     /protein_id="NP_001012204.1"
                     /db_xref="GeneID:363286"
                     /db_xref="RGD:1309252"
                     /translation="MNAAVVRRTQEALGKVIRRPPLTEKLLNKPPFRYLHDIITEVIR
                     ITGFMKGLYTDAEMKSDNVKDKDAKISFLQKAIDVVMMVSGEPLAAKPARIVAGHEPE
                     RTNELLQLIGKCCLSKLSSDEAVKRVLAGEKGDSRGRVLRTSKAQEPDNKSVKEEESR
                     TQKEEKRSSEVKERSSSAEHKQKEELKEDSKPREKERDKEKAKEADRDRHREPDRDRN
                     RDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRE
                     RRKSKNGEHTRDPDREKSRDADKSEKKADISVGASKSSTLKASKRRSKNSLEGRKEDN
                     ISAKILDSIVSGLNDEPDQETTAPEIDDNSASLWRENAEPEPAVKQKGDSPSDAEGEA
                     VPTSQDKLEVTENAEVSNELPSSLRRIPRPGSARPAPPRVKRQESTETLAGDRSGSGK
                     TVSTVIIDSQNSDNEDDEQFVVEAAPQLSEIAEIEMVPSGDLEDEEKHGGLVKKILET
                     KKDYEKLQQSPKPGEKERSLIFESAWKKEKDIVSKEIEKLRVSIQTLCKSALPLGKIM
                     DYIQEDVDAMQNELQLWHSENRQHAEALSKEQSITDSAVEPLKAELSELEQQIKDQQD
                     KICAVKANILKNEEKIQKMVHSINLSSRR"
     exon            243..311
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            312..473
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            474..611
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            612..1028
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1104
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1200
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1263
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..1284
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1369
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1370..1453
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1454..1577
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1578..1614
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1615..1691
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1915
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
     exon            1916..2254
                     /gene="Traf3ip1"
                     /gene_synonym="MIP-T3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctagcagcg gtgcactgtg ggatgggaga ccggcgcgcc gggacggcgg gcatctcgag
       61 gcaccgggca gaggcgcggt gcgcgaggag aggcgcgagc ggtcgcgggc ggcagcgcca
      121 tgaacgcggc agtggtgcgg cggacgcagg aggctctggg caaggttatc cggaggccgc
      181 cgctcaccga gaagctgctc aacaagccac cgttccgcta cctgcacgac atcatcactg
      241 aggtgattag gataactggc ttcatgaagg gcctctacac agatgctgag atgaagtcag
      301 ataacgtcaa ggataaagat gcaaagatta gcttcttaca gaaggccata gatgtggtca
      361 tgatggtgtc aggagaaccc ttggcagcaa aaccagctag aattgtggcc gggcacgaac
      421 ctgaaagaac caatgagctg cttcagttga ttggcaagtg ctgcctcagc aagctctcca
      481 gtgatgaggc tgtgaagaga gtcttagctg gggagaaggg ggactcgaga ggtcgagtcc
      541 tgaggacgtc gaaagcacaa gagcccgaca acaagagtgt gaaggaggaa gagtccagaa
      601 cacagaaaga ggagaaacga agctctgagg tgaaggagag aagctcaagt gcagagcaca
      661 aacagaagga ggaactaaag gaagacagca agcctcggga gaaggagaga gacaaggaga
      721 aggcaaagga ggctgacaga gaccgacaca gagaacccga cagggacaga aacagagacg
      781 gagagcgaga gaaagccaga gcacgggcca agcaggacag ggacagaaac aacaaagatc
      841 gggacagaga gactgaaagg gacagagata gggacaggag gagtgacggt gggaaagaaa
      901 aagagaggca gaaggaccga gaccgtgaca agggaaaaga ccgggaacgg cggaaatcga
      961 agaatggaga acatacccgg gatcctgaca gggagaagag cagagatgca gacaagtcag
     1021 agaaaaaggc tgacatttct gtaggagcat ccaagtcttc aacgttaaaa gcatcaaaac
     1081 ggcgatccaa gaattcactg gaaggaagga aagaggataa tatttcagct aagattttag
     1141 actccatagt gtcgggacta aatgacgaac cagatcagga aacgacagct ccagaaatag
     1201 atgataactc agctagtctg tggcgggaga acgctgagcc agagccagca gtaaagcaga
     1261 aaggtgactc tcccagcgac gcagaaggag aagctgtacc tactagccaa gataagctgg
     1321 aggtgacaga gaatgcagaa gtctcaaatg agcttccctc cagcctcaga agaatacctc
     1381 ggcctgggag tgcacggcca gcacctccca gggtcaaacg acaagagagc acagaaacac
     1441 tggcagggga caggtcggga agtggtaaga cggtctccac tgtgatcatc gactcccaga
     1501 actccgacaa tgaggacgac gagcagtttg tggtggaagc tgccccgcag ctgtcggaaa
     1561 tcgcagaaat tgaaatggtg ccatcagggg acctggagga tgaggagaag catggtgggc
     1621 tcgtaaaaaa gatcttggag acgaagaagg attatgagaa actgcagcag tctcccaagc
     1681 ctggtgagaa ggagagatcc cttatcttcg agtcagcatg gaagaaggag aaggacatcg
     1741 tttccaagga gatagagaag ctccgtgtgt ccatccagac cctgtgtaag agcgcacttc
     1801 ccctgggaaa gatcatggac tacatccagg aggatgtgga tgccatgcag aatgagctgc
     1861 agctgtggca cagcgagaac cggcagcatg ccgaggccct gagcaaggag cagagcatca
     1921 cagacagtgc ggtggagccc ctgaaggctg agctgtctga gctggaacaa cagatcaaag
     1981 accagcagga caagatctgt gcggtgaagg ccaacatcct gaagaatgag gagaagatcc
     2041 agaaaatggt gcacagtatc aacctgtcat cacgaagatg agtggccagc actgcagaga
     2101 tggaaccatc ctcctcatga tggacaaggg ggcaggaacc gccccactga gccctgtctg
     2161 ctaagacgat ggcctgctgt gccctgaccc agctaaggtc agagctttca gtttaggcac
     2221 taaactatta aaaggctgtg tttccctcct tccaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2281 aaaaaaa
//
