LOCUS       XM_006238601            4933 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TraB domain containing 2B (Trabd2b),
            transcript variant X1, mRNA.
ACCESSION   XM_006238601
VERSION     XM_006238601.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006238601.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006238601.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4933
                     /gene="Trabd2b"
                     /note="TraB domain containing 2B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 14 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:689914"
                     /db_xref="RGD:1586386"
     CDS             494..2107
                     /gene="Trabd2b"
                     /codon_start=1
                     /product="metalloprotease TIKI2 isoform X1"
                     /protein_id="XP_006238663.1"
                     /db_xref="GeneID:689914"
                     /db_xref="RGD:1586386"
                     /translation="MHAALAGPLLAALLATARARPQPPDGGQCRPPGSQRDLNSFLWT
                     IRRHPPAYLFGTIHVPYTRVWDFIPDNSKAAFQASTRVYFELDLTDPYTISALASCQL
                     LPHGENLQDVLPRELYWRLKRHLDYVKLMMPSWMTPAQRGKGLYADYLFNAIAGNWER
                     KRPVWVMLMVNSLTETDVRSRGVPVLDLYLAQQAEKMKKSTGAVERVEEQCHPLNGLN
                     FSQVLFALNQTLLQHESVRAGSLQAPYTTEDLIKHYNCGDLNAVIFNHDTSQLPNFIN
                     TTLPPHEQVTAQEIDSYFRQELIYKRNERMGKRVMALLQENQGKICFFAFGAGHFLGN
                     NTVIDVLRQAGLEVDHTPAGQAIHSPPAGSPAPPPEGTSPASRAPATPAAAVPEATSV
                     TPTTPPEEEDPVLSPHLLLPDSLSQLEEFGRQKWRKKLNKHQRPRQFNDLWVRIEDSD
                     FIQKDVLLCRQSEEHFLLAERTKRLSSVQAGTEACIPVGNDSIKHPRRAGCGPKKLKQ
                     EDLEFKTSMGNIARLCLEKSNSRLHSHLS"
ORIGIN      
        1 cctcagagcc gacccccgcc ccgccgcgcc ctccgccgca cttgtcccac tgcgcgcccc
       61 ctggagcgcc gcgcacccct gggacccttg cgcgccccgg gtgcccagca taacctgagt
      121 tcccccgctc atcctgggat ctcaggactt ccccaggagc cccgcgtacc cccggaccct
      181 gacgaggctc cgggaccccc acgcgctcta ggacccctgc gctctcgcag aattccgggg
      241 ctcggccaac ccggctgcgc gccctggtga ggggccccgc cccagaggat ccccctcttc
      301 caacagacgg agccccgccc cagagggacc cccaggtccg acagggacat ccagccacgc
      361 cccagcgggc tcccagcatc tcgcgcctgg agccctgtgc tccagaagat cctcggtgcc
      421 cagctggggg ctccccgccc agctgagggg gcgctgccca agagggtccc cgcgtccggc
      481 gggccccggc aggatgcacg ccgccctggc ggggccgctg ctagccgccc tccttgccac
      541 cgcccgcgcc cgcccgcaac ccccggacgg aggacagtgc cggccgcccg gatcgcagag
      601 ggacctgaac tccttcctgt ggactattcg gcgccatcct ccagcctact tgtttggcac
      661 catccacgtt ccctataccc gagtctggga cttcatccct gacaattcca aagcagcctt
      721 ccaggccagc actcgtgtct acttcgagct ggatctgaca gatccctaca ccatctcagc
      781 cctggccagt tgccagctgc tgccccacgg ggagaacctg caggacgtgc tgccaaggga
      841 gctctactgg cgcctgaagc gccacctgga ctatgtgaag ctgatgatgc cctcgtggat
      901 gacaccagca cagcgaggca agggcttata tgctgactac ctgttcaacg ccattgctgg
      961 taactgggag cgcaagaggc ctgtgtgggt gatgctcatg gtgaactccc tcacggagac
     1021 agatgtgcgc tcccgaggtg tgcctgtgct ggacctctac ctggcccaac aggctgagaa
     1081 aatgaagaag agcacgggag ctgtggagcg ggtggaggag cagtgtcatc ctctcaacgg
     1141 gctcaacttc tcccaggtgc tgtttgccct gaaccagact ctgctgcagc atgaaagtgt
     1201 gcgggctggg agtctgcagg caccttacac cacagaggac ctcatcaaac actacaactg
     1261 cggggacctc aatgcagtca tcttcaacca tgatacatcc cagctaccca acttcatcaa
     1321 caccaccctc ccacctcatg agcaggtgac agcccaggaa attgacagct acttccgcca
     1381 ggagctcatc tacaagagga atgagcgcat gggaaagagg gtcatggcgc tgctgcagga
     1441 aaaccagggc aagatctgct tcttcgcctt tggagcaggt cactttctgg ggaacaacac
     1501 tgtcatcgac gtcctaaggc aggcagggct ggaagtggat cacacacctg ctgggcaagc
     1561 catccacagt cctcctgctg ggagcccagc tccccctcct gagggcacct ctcctgccag
     1621 ccgagctccg gcaaccccag ctgctgcagt cccagaagca acctcagtga cccccacaac
     1681 ccctcctgag gaggaggatc cagtcctgtc cccacacctc ctgctcccgg acagcctaag
     1741 ccagctggag gagttcggaa ggcagaagtg gcgcaagaaa ctaaacaaac atcagcggcc
     1801 aaggcagttc aatgacctct gggtccgaat cgaggacagt gacttcattc aaaaggatgt
     1861 cctattgtgt cggcagagtg aagaacactt cctcttggca gagagaacaa agagactgag
     1921 ctcagtgcaa gctggcactg aagcctgtat ccctgtggga aatgacagta tcaaacatcc
     1981 acggagagct ggatgtgggc ccaagaagct gaagcaggaa gatcttgagt tcaagaccag
     2041 tatgggaaac atagcaagac tctgtcttga gaaatcaaac tcacggctac actctcattt
     2101 gtcttagacc ttcactcacc cagtatctcc tcagcgtgct gcagttacat tctctctcat
     2161 gcattctgcc atggccctaa gaagccaatg ttctgggctc caactgacag acaataccag
     2221 gtttcgagag gtaagaagtg gctgaagagc atcctgggtc taagtttcca caccaccccc
     2281 ttcagccact tcctagctat gaagtctgag gagaggctct catctgtcaa aacctcagta
     2341 cccatgtcta ccccttctcc tggcttacct gtgctccatg tcacatgatt ctccttactc
     2401 ttccctgagg tcctggcatc ttcctgtatc ggggttgtgc ccttctcttc tctgccctag
     2461 gtattcttcc ttctcccaat atctgtcacc tccctcctac ccacctcatg ctctgcataa
     2521 cagctccctc tcagagacat ctctgggcac ccatatgaaa tgatgcgcct agactctttc
     2581 tctcccccta gatttggttt atttttcctt tcatatcaac agtcaccttg gcagtacact
     2641 gtaaatctct ttatgaacct gacatctatt tcccaccccc aggaacacac agccccttcg
     2701 actaacaccc ttcctgcctc tctactgccc cgtctccctg gtgagctgcc tctcaaactc
     2761 tgagatgtca cttgaacgct gtgatgcaat gaagttggac ttcttgattt taatgaggtg
     2821 tgaataatta tagacaaagt ccagctgagg ctcctattca ggaacttacc cacaagccag
     2881 atctccgatg cacattcgat gtgagtctcc agccaggcca agaggagcca cagattaata
     2941 aaacatgctc cttggagtgc aaccagaaag ttgcactcca gaactttctg gcctcctgtg
     3001 aggggctcaa cagctaacag caagccctct tggctgtgga ctgtaccact tttaactaca
     3061 ggccatggct ctgggttata ggtctagaaa ccagccagtt agtctctagg tgagggaggg
     3121 ggtttgtgga ccagaagcct gtaggtactt ctatatcatg gaataaacag taacctctgt
     3181 cagaaatgcc tttccttcta tcttcctgag gacactgtgc ttttactcta gttctatttt
     3241 gctgttttct tcccttcttg tcacagagta ggacagggac aggccatcct ttggacacaa
     3301 ggtcttggag ggctcattaa ggctaccatg tggaggctca acggttaaga gcactgactg
     3361 ctcttccaga ggtcctgagt tcatttccca gcaaccacat ggtggttcac aaccatctgt
     3421 agtgggatct gatgccctct tctgctgtgt ctgaaaactg tgacggtgta ttctcattca
     3481 taaaagaaat aaatctttaa aacaaaacaa aaaaaacaaa aacaaaaaca aaaacctacc
     3541 atgcttggcc ctgagatgta ggaatcgacc tgcttccaga gctagtttct cactgacctc
     3601 aaacagcaca ggacagctca caaatacagt gtactttaca gcgttacaac tgtgaatgag
     3661 tgtcctgagg ctgatgattt gcaacagact gaaaactaaa gagaaaagaa ctgacttgca
     3721 agctagtgag gagcggagag cagaacttca gtaaacagcc aggggaaatg ggactgagca
     3781 ggggcaagaa ggacctctct ctgcctaggt gtgaggctcc ctgctgggag ctgcatccca
     3841 tggcctctct caaagcctta ggctggacat ggattagtct ctttgtacta cgttattaca
     3901 agaggtcatg atcacaagag gaagttcaga gcatggaggc tggcctggca tgaaggccaa
     3961 gagggcagaa aaaggaagag gaagggcagc aggcagcggg cagtaagcag agggcggaga
     4021 caggtgttag ccagaaaggc aagttgcttt cctcaagact gcaggatagg catgcattct
     4081 atgtctgcca atctacctgg accagcctaa cccaggattg gccgtctcca catcctacac
     4141 aaatcacaga cagagtttgg aaaagcactg tgagaaacaa acgttcagat tgcaaagcac
     4201 ccagcctgga gacctagagt gcaatacagg agcacattca gagaaggcct tccagcaaag
     4261 acactgcagg agctgtcgcg gagggatgaa gcccctctgc ggacagatgg gaacgtcaaa
     4321 tccagctggt ttcatcagga cacatccctc acccatcttg tgcttcttca gcccagtcag
     4381 ccctcccttc tggttctgtt gccactctgt ttatagttct ttctgactac cgtggccttc
     4441 cttcacaagg gggagtctgc atcctatttc actgggccct ttggttttaa tttcctctgc
     4501 ttgcatctga ccccagatgc caggtcccag acataccaag cactccccta cacgccccct
     4561 tgtctcagcc aggagaggaa cttcagggct catcttcctg ctcacataca ggactccagg
     4621 cttctccttt tacctgtcct gggtctttgc accatccgtt gcccctcccc tttgccctca
     4681 gcctctcccc cttctttagt gccttctttc actattaaaa cagcatcagg tatccctcag
     4741 tgtcaataac gtgggaaaaa aagctgaatc ctaaaatcaa aaactgtgag caatgtattc
     4801 tttggggttc tctaagaagc acctctgctt ccaaaaccaa tttggactta taatggtgtt
     4861 tcttcatcaa agagatgaag aaaaacgaaa actgtcattt ttgtgcttga ataaaattga
     4921 tcatttggtc tga
//
